Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488036_104245 | Not Available | Positive | 251959 - 252924 | 37223.3 |
| thioredoxin | SAMN04488036_104246 | Not Available | Negative | 252975 - 253295 | 11223.2 |
| dna helicase/exodeoxyribonuclease v, subunit a | SAMN04488036_104247 | Not Available | Negative | 253337 - 256735 | 124885.0 |
| double-strand break repair protein addb | SAMN04488036_104248 | Not Available | Negative | 256732 - 259596 | 106160.0 |
| moba-like ntp transferase domain-containing protein | SAMN04488036_104249 | Not Available | Negative | 259652 - 260320 | 23989.9 |
| hypothetical protein | SAMN04488036_104250 | Not Available | Negative | 260320 - 261339 | 38053.3 |
| trna threonylcarbamoyladenosine biosynthesis protein tsae | SAMN04488036_104251 | Not Available | Negative | 261332 - 261796 | 17054.0 |
| pas fold | SAMN04488036_104252 | Not Available | Negative | 261834 - 263321 | 54948.3 |
| two-component system, sensor histidine kinase regb | SAMN04488036_104253 | Not Available | Negative | 263412 - 264785 | 50480.4 |
| protein sco1/2 | SAMN04488036_104254 | Not Available | Positive | 264870 - 265496 | 22989.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
