Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein translocase subunit secb | SAMN04488036_104235 | Not Available | Negative | 243240 - 243725 | 18295.8 |
| upf0716 protein fxsa | SAMN04488036_104236 | Not Available | Negative | 243783 - 244274 | 17720.5 |
| predicted lipid-binding transport protein, tim44 family | SAMN04488036_104237 | Not Available | Positive | 244380 - 245036 | 23905.3 |
| membrane-bound lytic murein transglycosylase a | SAMN04488036_104238 | Not Available | Positive | 245033 - 246070 | 37752.1 |
| dna-nicking endonuclease, smr domain | SAMN04488036_104239 | Not Available | Positive | 246067 - 246654 | 21613.5 |
| predicted arabinose efflux permease, mfs family | SAMN04488036_104240 | Not Available | Negative | 246651 - 247865 | 43815.3 |
| esterase/lipase superfamily enzyme | SAMN04488036_104241 | Not Available | Negative | 247862 - 248956 | 40485.0 |
| atp-dependent hsluv protease atp-binding subunit hslu | SAMN04488036_104242 | Not Available | Negative | 249024 - 250334 | 48382.9 |
| predicted oxidoreductase | SAMN04488036_104243 | Not Available | Negative | 250331 - 251365 | 37178.1 |
| hslv component of hsluv peptidase. threonine peptidase. merops family t01b | SAMN04488036_104244 | Not Available | Negative | 251362 - 251919 | 19429.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
