Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| chromosome partitioning protein | SAMN04488036_104225 | Not Available | Negative | 233585 - 234394 | 29176.7 |
| 16s rrna (guanine527-n7)-methyltransferase | SAMN04488036_104226 | Not Available | Negative | 234387 - 235010 | 22748.2 |
| trna uridine 5-carboxymethylaminomethyl modification enzyme | SAMN04488036_104227 | Not Available | Negative | 235010 - 236881 | 67651.8 |
| trna modification gtpase trme | SAMN04488036_104228 | Not Available | Negative | 236897 - 238195 | 46226.9 |
| transcription termination factor rho | SAMN04488036_104229 | Not Available | Negative | 238206 - 239477 | 47032.6 |
| putative membrane protein | SAMN04488036_104230 | Not Available | Negative | 239599 - 240048 | 17412.9 |
| septum formation protein | SAMN04488036_104231 | Not Available | Positive | 240460 - 241059 | 22142.7 |
| shikimate dehydrogenase | SAMN04488036_104232 | Not Available | Positive | 241056 - 241889 | 29653.0 |
| dephospho-coa kinase | SAMN04488036_104233 | Not Available | Positive | 241886 - 242479 | 21022.4 |
| dna polymerase-3 subunit epsilon | SAMN04488036_104234 | Not Available | Positive | 242472 - 243209 | 26998.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
