Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribokinase | SAMN04488036_104215 | Not Available | Negative | 223337 - 224206 | 29978.8 |
| dna mismatch repair protein muts | SAMN04488036_104216 | Not Available | Positive | 224339 - 226981 | 94839.3 |
| uncharacterized protein | SAMN04488036_104217 | Not Available | Negative | 226984 - 228036 | 39136.9 |
| molecular chaperone grpe | SAMN04488036_104218 | Not Available | Negative | 228092 - 228652 | 20827.4 |
| heat-inducible transcription repressor hrca | SAMN04488036_104219 | Not Available | Negative | 228662 - 229726 | 38721.1 |
| rnase ph | SAMN04488036_104220 | Not Available | Positive | 229864 - 230577 | 25158.2 |
| ditpase | SAMN04488036_104221 | Not Available | Positive | 230574 - 231185 | 22233.3 |
| oxygen-independent coproporphyrinogen-3 oxidase | SAMN04488036_104222 | Not Available | Positive | 231178 - 232335 | 43315.2 |
| hypothetical protein | SAMN04488036_104223 | Not Available | Positive | 232335 - 232688 | 12775.2 |
| chromosome partitioning protein, parb family | SAMN04488036_104224 | Not Available | Negative | 232678 - 233571 | 32940.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
