Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| multidrug resistance efflux pump | SAMN04488036_104184 | Not Available | Positive | 188487 - 189551 | 38365.5 |
| protein of unknown function | SAMN04488036_104185 | Not Available | Positive | 189541 - 190599 | 37695.4 |
| threonine/homoserine efflux transporter rhta | SAMN04488036_104186 | Not Available | Positive | 190714 - 191589 | 30757.8 |
| cytochrome c biogenesis protein ccda | SAMN04488036_104187 | Not Available | Positive | 191647 - 192360 | 24399.6 |
| thioredoxin | SAMN04488036_104188 | Not Available | Positive | 192378 - 192785 | 14575.4 |
| transcriptional regulator, arac family with amidase-like domain | SAMN04488036_104189 | Not Available | Positive | 192941 - 193990 | 38314.9 |
| peptide-methionine (r)-s-oxide reductase | SAMN04488036_104190 | Not Available | Positive | 194075 - 194527 | 16688.2 |
| peptide-methionine (s)-s-oxide reductase | SAMN04488036_104191 | Not Available | Positive | 194524 - 195030 | 18868.1 |
| deoxyribodipyrimidine photolyase-related protein | SAMN04488036_104192 | Not Available | Positive | 195141 - 196679 | 58931.5 |
| n-methylhydantoinase a/oxoprolinase/acetone carboxylase, beta subunit | SAMN04488036_104193 | Not Available | Negative | 196676 - 198682 | 70014.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
