Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily | SAMN04488036_104174 | Not Available | Negative | 178303 - 179298 | 39159.5 |
| ribulose-5-phosphate 4-epimerase/fuculose-1-phosphate aldolase | SAMN04488036_104175 | Not Available | Negative | 179335 - 180090 | 28090.1 |
| transcriptional regulator, lysr family | SAMN04488036_104176 | Not Available | Positive | 180204 - 181094 | 33311.7 |
| adenine deaminase | SAMN04488036_104177 | Not Available | Positive | 181198 - 183021 | 64512.4 |
| amp nucleosidase | SAMN04488036_104178 | Not Available | Positive | 183018 - 184490 | 54384.5 |
| dna-binding protein hu-beta | SAMN04488036_104179 | Not Available | Positive | 184623 - 184910 | 9959.28 |
| cysteine synthase a | SAMN04488036_104180 | Not Available | Negative | 185006 - 186073 | 38256.3 |
| catechol 2,3-dioxygenase | SAMN04488036_104181 | Not Available | Negative | 186264 - 186632 | 13234.9 |
| ion channel | SAMN04488036_104182 | Not Available | Negative | 186629 - 187285 | 24085.0 |
| predicted purr-regulated permease perm | SAMN04488036_104183 | Not Available | Positive | 187402 - 188490 | 38065.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
