Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| farnesyl diphosphate synthase | SAMN04488036_104164 | Not Available | Positive | 167779 - 168648 | 30420.2 |
| 1-deoxy-d-xylulose-5-phosphate synthase | SAMN04488036_104165 | Not Available | Positive | 168664 - 170592 | 68183.9 |
| nucleoside-diphosphate-sugar epimerase | SAMN04488036_104166 | Not Available | Negative | 170643 - 171554 | 33026.6 |
| methyltransferase domain-containing protein | SAMN04488036_104167 | Not Available | Positive | 171575 - 172207 | 22497.4 |
| crotonobetainyl-coa hydratase | SAMN04488036_104168 | Not Available | Negative | 172208 - 172993 | 28524.1 |
| dj-1/pfpi family protein | SAMN04488036_104169 | Not Available | Negative | 173000 - 173605 | 21715.4 |
| acetyl-coa synthetase | SAMN04488036_104170 | Not Available | Negative | 173605 - 175623 | 69665.9 |
| selenoprotein w-related protein | SAMN04488036_104171 | Not Available | Negative | 175777 - 176052 | 10200.3 |
| butyryl-coa dehydrogenase | SAMN04488036_104172 | Not Available | Negative | 176119 - 177282 | 43114.6 |
| transcriptional regulator, arac family with amidase-like domain | SAMN04488036_104173 | Not Available | Positive | 177337 - 178299 | 35265.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
