Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| chorismate synthase | SAMN04488036_104153 | Not Available | Negative | 158520 - 159626 | 39394.8 |
| hypothetical protein | SAMN04488036_104154 | Not Available | Negative | 159748 - 160515 | 26683.9 |
| thiamine transport system substrate-binding protein | SAMN04488036_104156 | Not Available | Positive | 160849 - 161847 | 35303.3 |
| thiamine transport system permease protein | SAMN04488036_104157 | Not Available | Positive | 161823 - 163379 | 54606.6 |
| thiamine transport system atp-binding protein | SAMN04488036_104158 | Not Available | Positive | 163366 - 164058 | 24327.3 |
| branched chain amino acid aminotransferase apoenzyme | SAMN04488036_104159 | Not Available | Negative | 164156 - 165025 | 32242.2 |
| dna-binding transcriptional regulator, marr family | SAMN04488036_104160 | Not Available | Positive | 165195 - 165692 | 18738.3 |
| two-component system, ompr family, phosphate regulon response regulator ompr | SAMN04488036_104161 | Not Available | Positive | 165702 - 166403 | 26458.0 |
| acetoin utilization deacetylase acuc | SAMN04488036_104162 | Not Available | Positive | 166463 - 167398 | 33152.9 |
| exodeoxyribonuclease vii small subunit | SAMN04488036_104163 | Not Available | Positive | 167395 - 167637 | 8842.59 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
