Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycine/d-amino acid oxidase | SAMN04488036_104143 | Not Available | Negative | 148862 - 149911 | 36807.7 |
| trna u34 5-methylaminomethyl-2-thiouridine-forming methyltransferase mnmc | SAMN04488036_104144 | Not Available | Positive | 149970 - 150647 | 24915.3 |
| permease of the drug/metabolite transporter (dmt) superfamily | SAMN04488036_104145 | Not Available | Positive | 150644 - 151516 | 31921.7 |
| tungstate transport system substrate-binding protein | SAMN04488036_104146 | Not Available | Negative | 151556 - 152356 | 27887.3 |
| phosphate abc transporter atp-binding protein, phot family | SAMN04488036_104147 | Not Available | Negative | 152353 - 153072 | 26333.9 |
| tungstate transport system permease protein | SAMN04488036_104148 | Not Available | Negative | 153066 - 153953 | 31989.1 |
| trap-type c4-dicarboxylate transport system, substrate-binding protein | SAMN04488036_104149 | Not Available | Positive | 154145 - 155188 | 37622.2 |
| permease of the drug/metabolite transporter (dmt) superfamily | SAMN04488036_104150 | Not Available | Negative | 155249 - 156172 | 32690.0 |
| malonyl-coa/methylmalonyl-coa synthetase | SAMN04488036_104151 | Not Available | Positive | 156295 - 157797 | 53423.9 |
| uncharacterized protein | SAMN04488036_104152 | Not Available | Negative | 157867 - 158520 | 24047.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
