Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar or nucleoside kinase, ribokinase family | SAMN04488036_104133 | Not Available | Negative | 141220 - 142206 | 34913.3 |
| dna-(apurinic or apyrimidinic site) lyase /endonuclease iii | SAMN04488036_104134 | Not Available | Negative | 142203 - 142847 | 24182.3 |
| voltage-gated sodium channel | SAMN04488036_104135 | Not Available | Negative | 142903 - 143682 | 28889.4 |
| sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily | SAMN04488036_104136 | Not Available | Negative | 143775 - 144623 | 32375.2 |
| transcriptional regulator, tetr family | SAMN04488036_104137 | Not Available | Negative | 144620 - 145165 | 19490.9 |
| dna-o6-methylguanine--protein-cysteine s-methyltransferase /transcriptional regulator ada | SAMN04488036_104138 | Not Available | Positive | 145309 - 146166 | 31510.9 |
| outer membrane protein ompa | SAMN04488036_104139 | Not Available | Positive | 146289 - 146933 | 22066.0 |
| nad(p)h-dependent fmn reductase | SAMN04488036_104140 | Not Available | Positive | 147026 - 147565 | 18731.2 |
| catechol 2,3-dioxygenase | SAMN04488036_104141 | Not Available | Negative | 147627 - 148025 | 14271.0 |
| 3-methylfumaryl-coa hydratase | SAMN04488036_104142 | Not Available | Positive | 148068 - 148865 | 29414.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
