Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function | SAMN04488036_104113 | Not Available | Negative | 116798 - 117430 | 23928.7 |
| 7-keto-8-aminopelargonate synthetase | SAMN04488036_104114 | Not Available | Negative | 117433 - 118659 | 44112.6 |
| s-adenosyl-l-methionine methyltransferase | SAMN04488036_104115 | Not Available | Negative | 118817 - 119308 | 17795.2 |
| peptide/nickel transport system atp-binding protein | SAMN04488036_104116 | Not Available | Positive | 119551 - 121329 | 64661.3 |
| peptide/nickel transport system substrate-binding protein | SAMN04488036_104117 | Not Available | Positive | 121322 - 123220 | 72021.6 |
| peptide/nickel transport system permease protein | SAMN04488036_104118 | Not Available | Positive | 123230 - 124258 | 37495.8 |
| peptide/nickel transport system permease protein | SAMN04488036_104119 | Not Available | Positive | 124255 - 125406 | 42536.1 |
| small-conductance mechanosensitive channel | SAMN04488036_104120 | Not Available | Negative | 125559 - 127898 | 87583.7 |
| udp-n-acetyl-d-galactosamine dehydrogenase | SAMN04488036_104121 | Not Available | Positive | 128118 - 129392 | 45514.5 |
| predicted glycosyl transferase | SAMN04488036_104122 | Not Available | Positive | 129413 - 130633 | 44823.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
