Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative atp-binding cassette transporter | SAMN04488036_104103 | Not Available | Positive | 105876 - 107585 | 61988.5 |
| hypothetical protein | SAMN04488036_104104 | Not Available | Positive | 107582 - 108358 | 28587.6 |
| archaetidylinositol phosphate synthase | SAMN04488036_104105 | Not Available | Negative | 108325 - 108954 | 22744.8 |
| xylulokinase | SAMN04488036_104106 | Not Available | Negative | 108969 - 110489 | 54104.6 |
| phosphatidylinositol alpha-mannosyltransferase | SAMN04488036_104107 | Not Available | Negative | 110571 - 111689 | 40172.4 |
| lipopolysaccharide export lptbfgc system, permease protein lptf | SAMN04488036_104108 | Not Available | Negative | 111686 - 112831 | 41448.7 |
| lipopolysaccharide export lptbfgc system, permease protein lptf | SAMN04488036_104109 | Not Available | Negative | 112828 - 113955 | 41003.2 |
| phosphatidate cytidylyltransferase | SAMN04488036_104110 | Not Available | Negative | 113996 - 114886 | 30560.0 |
| 3-dehydrosphinganine reductase | SAMN04488036_104111 | Not Available | Negative | 114883 - 115683 | 27476.0 |
| myo-inositol-1-phosphate synthase | SAMN04488036_104112 | Not Available | Negative | 115686 - 116801 | 40383.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
