Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polyphosphate kinase | SAMN04488036_107121 | Not Available | Positive | 1068113 - 1070287 | 81852.1 |
| exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase | SAMN04488036_107122 | Not Available | Positive | 1070351 - 1071898 | 57712.9 |
| hypothetical protein | SAMN04488036_107123 | Not Available | Negative | 1071929 - 1072306 | 13749.6 |
| hypothetical protein | SAMN04488036_107124 | Not Available | Positive | 1072433 - 1073335 | 33124.8 |
| metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family | SAMN04488036_107125 | Not Available | Negative | 1073351 - 1074364 | 37657.7 |
| dnaj like chaperone protein | SAMN04488036_107126 | Not Available | Negative | 1074364 - 1075041 | 25090.0 |
| phosphinothricin acetyltransferase | SAMN04488036_107127 | Not Available | Negative | 1075072 - 1075551 | 16995.4 |
| glyoxalase-like domain-containing protein | SAMN04488036_107128 | Not Available | Negative | 1075548 - 1076156 | 21753.9 |
| methylmalonyl-coa mutase | SAMN04488036_107129 | Not Available | Negative | 1076333 - 1078459 | 77157.7 |
| hypothetical protein | SAMN04488036_107130 | Not Available | Negative | 1078476 - 1079441 | 35714.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
