Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipoprotein-releasing system atp-binding protein | SAMN04488036_107111 | Not Available | Negative | 1058658 - 1059341 | 24177.1 |
| lipoprotein-releasing system permease protein | SAMN04488036_107112 | Not Available | Negative | 1059334 - 1060623 | 46654.2 |
| protein of unknown function | SAMN04488036_107113 | Not Available | Negative | 1060684 - 1061175 | 17528.1 |
| dna-binding transcriptional regulator, merr family | SAMN04488036_107114 | Not Available | Negative | 1061207 - 1061575 | 13041.8 |
| hypothetical protein | SAMN04488036_107115 | Not Available | Positive | 1061654 - 1062055 | 15039.5 |
| hypothetical protein | SAMN04488036_107116 | Not Available | Negative | 1062106 - 1062369 | 9221.12 |
| prolyl-trna synthetase | SAMN04488036_107117 | Not Available | Negative | 1062526 - 1063878 | 50833.4 |
| peptidoglycan/lps o-acetylase oafa/yrhl, contains acyltransferase and sgnh-hydrolase domains | SAMN04488036_107118 | Not Available | Positive | 1064069 - 1066075 | 73965.2 |
| predicted purr-regulated permease perm | SAMN04488036_107119 | Not Available | Positive | 1066217 - 1067305 | 38687.3 |
| hypothetical protein | SAMN04488036_107120 | Not Available | Positive | 1067309 - 1067977 | 23699.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
