Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| c-terminal region of aryl-sulfatase | SAMN04488036_10791 | Not Available | Negative | 1043752 - 1044432 | 24580.7 |
| sulfatase | SAMN04488036_10792 | Not Available | Negative | 1044582 - 1045190 | 21855.9 |
| long-chain acyl-coa synthetase | SAMN04488036_10793 | Not Available | Negative | 1045300 - 1046766 | 52242.1 |
| pas domain s-box-containing protein | SAMN04488036_10794 | Not Available | Positive | 1046881 - 1047432 | 20585.7 |
| acetyl-coa carboxylase biotin carboxyl carrier protein | SAMN04488036_10795 | Not Available | Positive | 1047569 - 1048069 | 16984.1 |
| acetyl-coa carboxylase, biotin carboxylase subunit | SAMN04488036_10796 | Not Available | Positive | 1048079 - 1049431 | 48728.3 |
| leucyl/phenylalanyl-trna--protein transferase | SAMN04488036_10797 | Not Available | Positive | 1049451 - 1050071 | 22914.4 |
| hypothetical protein | SAMN04488036_10798 | Not Available | Negative | 1050032 - 1050532 | 18097.6 |
| phospholipid/cholesterol/gamma-hch transport system substrate-binding protein | SAMN04488036_10799 | Not Available | Negative | 1050532 - 1050978 | 15112.7 |
| nadh:ubiquinone oxidoreductase subunit | SAMN04488036_107100 | Not Available | Negative | 1050983 - 1051369 | 14502.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
