Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488036_10781 | Not Available | Negative | 1033305 - 1033466 | 6112.46 |
| protoheme ix farnesyltransferase | SAMN04488036_10782 | Not Available | Negative | 1033468 - 1034406 | 33605.4 |
| cytochrome c oxidase subunit 2 | SAMN04488036_10783 | Not Available | Negative | 1034498 - 1035346 | 31228.6 |
| tldd protein | SAMN04488036_10784 | Not Available | Positive | 1035529 - 1036950 | 49468.6 |
| dna protecting protein dpra | SAMN04488036_10785 | Not Available | Positive | 1037094 - 1038236 | 40304.3 |
| hypothetical protein | SAMN04488036_10786 | Not Available | Negative | 1038239 - 1038796 | 20769.8 |
| dna topoisomerase i | SAMN04488036_10787 | Not Available | Positive | 1038827 - 1041415 | 96509.1 |
| l,d-transpeptidase catalytic domain | SAMN04488036_10788 | Not Available | Positive | 1041638 - 1042207 | 21155.2 |
| 3-oxoacid coa-transferase subunit a | SAMN04488036_10789 | Not Available | Positive | 1042310 - 1043032 | 25981.2 |
| 3-oxoacid coa-transferase subunit b | SAMN04488036_10790 | Not Available | Positive | 1043035 - 1043664 | 22070.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
