Flavobacterium aquaticum str. CGMCC 1.12398

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium aquaticum str. CGMCC 1.12398 is a Gram-negative bacterium characterized by its rod shape and non-motile nature. This species is notable for possessing flagella, which is a common trait among many bacterial taxa, despite its non-motility indicating that it may not utilize these structures for movement. The strain has a single replicon, suggesting a streamlined genetic organization that is typical for its genus. The genomic information for Flavobacterium aquaticum str. CGMCC 1.12398 is cataloged under the accession number QLMI00000000.1, providing a resource for researchers interested in the genetic and functional characteristics of this organism. From a biological and ecological perspective, members of the Flavobacterium genus are often found in aquatic environments, where they play significant roles in the degradation of organic matter. This specific strain may contribute to nutrient cycling and the maintenance of ecological balance in freshwater ecosystems. Understanding the traits and functions of Flavobacterium aquaticum str. CGMCC 1.12398 can provide insights into the ecological roles of bacteria in aquatic habitats and their potential applications in bioremediation or environmental monitoring.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium aquaticum
StrainCGMCC 1.12398

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium aquaticum str. CGMCC 1.12398
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium aquaticum strain CGMCC 1.12398 Ga0171599_129, whole

Gene Summary

Adenine Count

953442 bp

Thymine Count

951647 bp

Guanine Count

457117 bp

Cytosine Count

459095 bp

Genome Length

2821499 bp

Protein-coding Genes

2566 genes

Non-Coding Genes

78 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gt2 family glycosyltransferaseB0I03_10126Not AvailablePositive22667 - 2378542749.6
2-oxoglutarate dehydrogenase e2 component (dihydrolipoamide succinyltransferase)B0I03_10127Not AvailablePositive23870 - 2518946816.2
hypothetical proteinB0I03_10128Not AvailablePositive25526 - 2673144700.7
dna polymerase-3 subunit epsilonB0I03_10129Not AvailablePositive26810 - 2758029230.9
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase in catechol pathwayB0I03_10130Not AvailablePositive27650 - 2826122966.7
hypothetical proteinB0I03_10131Not AvailablePositive28264 - 2860813302.2
nicotinamide-nucleotide amidaseB0I03_10132Not AvailablePositive28651 - 2989846070.6
lsu ribosomal protein l28pB0I03_10133Not AvailablePositive29978 - 302208923.09
lsu ribosomal protein l33pB0I03_10134Not AvailablePositive30241 - 304236918.59
uncharacterized protein duf4295B0I03_10135Not AvailablePositive30432 - 305845590.98

Displaying genes 51 – 60 of 155 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

13 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0003187N-succinyl-(2S,6S)-2,6-diaminoheptanedioateC11H16N2O7Chemical structure of N-succinyl-(2S,6S)-2,6-diaminoheptanedioateNot available
Average288.257Da
Monoisotopic288.096848Da
BASm00033514-methyl-5-(2-phosphooxyethyl)-thiazoleC6H8NO4PSChemical structure of 4-methyl-5-(2-phosphooxyethyl)-thiazoleNot available
Average221.17Da
Monoisotopic220.9922631Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003462(2S)-2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinateC13H19N4O12PChemical structure of (2S)-2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinate3031-95-6
Average454.2833Da
Monoisotopic454.0737086Da
BASm00034972-C-methyl-D-erythritol 2,4-cyclic diphosphateC5H10O9P2Chemical structure of 2-C-methyl-D-erythritol 2,4-cyclic diphosphate143488-44-2
Average276.075Da
Monoisotopic275.9800049Da
BASm0003657N-acetyl-D-muramate 6-phosphateC11H17NO11PChemical structure of N-acetyl-D-muramate 6-phosphateNot available
Average370.228Da
Monoisotopic370.0555681Da
BASm0008099(2E)-4-hydroxy-3-methylbut-2-enyl diphosphateC5H9O8P2Chemical structure of (2E)-4-hydroxy-3-methylbut-2-enyl diphosphateNot available
Average259.0677Da
Monoisotopic258.9772653Da
BASm0010316N(1)-(5-phospho-beta-D-ribosyl)glycinamideC7H14N2O8PChemical structure of N(1)-(5-phospho-beta-D-ribosyl)glycinamideNot available
Average285.169Da
Monoisotopic285.049326Da

Displaying 1–10 of 13 metabolites

Health Effects

No health effects information available for this bacterium.