Flavobacterium aquaticum str. CGMCC 1.12398

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium aquaticum strain CGMCC 1.12398 is a Gram-negative, rod-shaped bacterium. This classification indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, a characteristic typical of Gram-negative microorganisms. The rod shape is indicative of its morphologic structure, which can influence its motility and environmental interactions. As a member of the Flavobacterium genus, this strain may exhibit traits common to this group, such as the ability to degrade complex organic materials, although specific metabolic capabilities are not detailed in the provided information. The Gram-negative nature of Flavobacterium aquaticum str. CGMCC 1.12398 may also suggest potential implications for its survival in diverse environments, as it can be more resistant to certain antibiotics and chemical agents compared to Gram-positive bacteria. The ecological role of Flavobacterium species is often associated with aquatic environments, where they can contribute to the decomposition of organic matter and nutrient cycling. Given the strain's designation, it may be particularly relevant in freshwater ecosystems, potentially playing a role in maintaining the balance of microbial communities and the overall health of aquatic habitats. In summary, Flavobacterium aquaticum str. CGMCC 1.12398's Gram-negative, rod-shaped characteristics position it within a group of bacteria that are essential for nutrient recycling in aquatic environments, highlighting its possible significance in ecological dynamics.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium aquaticum
StrainCGMCC 1.12398

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Image of Flavobacterium aquaticum str. CGMCC 1.12398
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium aquaticum str. CGMCC 1.12398


Gene Summary

Adenine Count

953442 bp

Thymine Count

951647 bp

Guanine Count

457117 bp

Cytosine Count

459095 bp

Genome Length

2821499 bp

Protein-coding Genes

2566 genes

Non-Coding Genes

78 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
1_nc_021800: prophage clp protease-like proteinB0I03_10534Not Available+1843733 - 184504047731.7
hypothetical proteinB0I03_10535Not Available+1845075 - 184599533535.2
1_nc_021800: hypothetical proteinB0I03_10536Not Available+1846084 - 184665620436.8
hypothetical proteinB0I03_10537Not Available+1846747 - 184715415645.4
1_nc_021800: phage portal proteinB0I03_10538Not Available+1847154 - 184829042967.3
1_nc_021800: structural proteinB0I03_10539Not Available+1848283 - 184880119727.6
Hypothetical proteinB0I03_10540Not Available+1848805 - 185086273947.4
Putative tail fiber proteinB0I03_10541Not Available+1850862 - 185271567616.3
hypothetical proteinB0I03_10542Not Available+1852718 - 18529067522.55
Hypothetical proteinB0I03_10543Not Available+1852969 - 185343017813.2

Displaying genes 1 – 10 of 155 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

13 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0003187N-succinyl-(2S,6S)-2,6-diaminoheptanedioateC11H16N2O7Chemical structure of N-succinyl-(2S,6S)-2,6-diaminoheptanedioateNot available
Average288.257Da
Monoisotopic288.096848Da
BASm00033514-methyl-5-(2-phosphooxyethyl)-thiazoleC6H8NO4PSChemical structure of 4-methyl-5-(2-phosphooxyethyl)-thiazoleNot available
Average221.17Da
Monoisotopic220.9922631Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003462(2S)-2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinateC13H19N4O12PChemical structure of (2S)-2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinate3031-95-6
Average454.2833Da
Monoisotopic454.0737086Da
BASm00034972-C-methyl-D-erythritol 2,4-cyclic diphosphateC5H10O9P2Chemical structure of 2-C-methyl-D-erythritol 2,4-cyclic diphosphate143488-44-2
Average276.075Da
Monoisotopic275.9800049Da
BASm0003657N-acetyl-D-muramate 6-phosphateC11H17NO11PChemical structure of N-acetyl-D-muramate 6-phosphateNot available
Average370.228Da
Monoisotopic370.0555681Da
BASm0008099(2E)-4-hydroxy-3-methylbut-2-enyl diphosphateC5H9O8P2Chemical structure of (2E)-4-hydroxy-3-methylbut-2-enyl diphosphateNot available
Average259.0677Da
Monoisotopic258.9772653Da
BASm0010316N(1)-(5-phospho-beta-D-ribosyl)glycinamideC7H14N2O8PChemical structure of N(1)-(5-phospho-beta-D-ribosyl)glycinamideNot available
Average285.169Da
Monoisotopic285.049326Da

Displaying 1–10 of 13 metabolites