Flavobacterium akiainvivens str. IK-1

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium akiainvivens str. IK-1 is a Gram-negative, non-motile rod-shaped bacterium. This organism is characterized by its single replicon, suggesting a streamlined genetic structure. The presence of flagella indicates potential for motility; however, being classified as non-motile implies that this feature may not be utilized for movement in its natural habitat. The strain is cataloged under the accession number LIYD00000000.1, which provides a unique identifier for genetic and genomic studies. The characteristics of Flavobacterium akiainvivens str. IK-1 position it within the broader context of the Flavobacterium genus, known for its role in decomposing organic material in aquatic environments. Ecologically, Flavobacterium species are recognized for their contributions to biogeochemical cycles, particularly in nutrient cycling and organic matter decomposition. The non-motile nature of F. akiainvivens str. IK-1 may indicate an ecological niche where it participates in the breakdown of organic substances in a stationary manner, possibly adhering to substrates in its environment. This trait emphasizes the importance of such bacteria in maintaining ecosystem health and nutrient availability, especially in aquatic systems where they can influence the microbial community structure and functionality.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium akiainvivens
StrainIK-1

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium akiainvivens str. IK-1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium akiainvivens str. IK-1


Gene Summary

Adenine Count

1268209 bp

Thymine Count

1277821 bp

Guanine Count

992722 bp

Cytosine Count

992006 bp

Genome Length

4533022 bp

Protein-coding Genes

3841 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
23s ribosomal rnaNot AvailableNot AvailablePositive6 - 2881Not Available
Trna-alaNot AvailableNot AvailablePositive108 - 184Not Available
Trna-ileNot AvailableNot AvailablePositive291 - 367Not Available
16s ribosomal rnaNot AvailableNot AvailablePositive459 - 1983Not Available
5s ribosomal rnaNot AvailableNot AvailablePositive3023 - 3131Not Available
hypothetical proteinAM493_00030Not AvailablePositive5498 - 8820119854.0
atp-binding proteinAM493_00035Not AvailableNegative9239 - 998528615.5
transposaseAM493_00040Not AvailableNegative10012 - 1155359192.4
beta-glucuronidaseAM493_00045T2KPJ7Positive11830 - 1369271733.8
cytochrome c oxidase subunit iiAM493_00050Not AvailablePositive14202 - 1458814434.3

Displaying genes 1 – 10 of 3902 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

151 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00006473-hydroxypropanoateC3H5O3Chemical structure of 3-hydroxypropanoateNot available
Average89.071Da
Monoisotopic89.0244176Da
BASm0000848hexanoateC6H11O2Chemical structure of hexanoateNot available
Average115.1503Da
Monoisotopic115.075904596Da

Displaying 1–10 of 151 metabolites

Health Effects

No health effects information available for this bacterium.