Shigella boydii 965-58

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Shigella

Description

Shigella boydii 965-58 is a Gram-negative, rod-shaped bacterium that primarily exhibits a cell arrangement of singles and pairs. It thrives optimally at 37.0°C, suggesting a close association with warm-blooded hosts. This microbe is classified as a chemoorganotroph, indicating its reliance on organic compounds as an energy source, which aligns with its habitat being host-associated. Furthermore, S. boydii 965-58 is a facultative anaerobe, allowing it to adapt to varying oxygen levels within its host environment. The traits of S. boydii 965-58 highlight its specialized ecological niche within host organisms, where it likely competes for nutrients and interacts with the host's microbiota. Its ability to thrive at physiological temperatures and utilize organic substrates efficiently suggests that it may play a role in certain metabolic processes within the gut or associated tissues of its host. The facultative anaerobic nature of this strain also indicates its potential for survival and growth in diverse oxygen conditions, possibly allowing it to colonize different ecological niches within the host's gastrointestinal tract. Studying such traits in S. boydii 965-58 could provide insights into its ecological dynamics and interactions with both host and microbial community members in its environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusShigella
SpeciesShigella boydii
Strain965-58

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Shigella boydii 965-58
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Shigella boydii 965-58 gss96558.contig.95, whole genome shotgun

Gene Summary

Adenine Count

1275803 bp

Thymine Count

1282878 bp

Guanine Count

1313556 bp

Cytosine Count

1312359 bp

Genome Length

5184598 bp

Protein-coding Genes

5133 genes

Non-Coding Genes

512 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
inner membrane protein yiaaSB96558_4533Not AvailableNegative4339850 - 434028716123.6
inner membrane protein yiabSB96558_4534Not AvailableNegative4340333 - 434067412525.9
xylulose kinase domain proteinSB96558_4535Not AvailableNegative4340839 - 43410307142.84
transposase is116/is110/is902 family proteinSB96558_4536Not AvailablePositive4341264 - 434246043139.6
xylulokinaseSB96558_4537Not AvailableNegative4342455 - 434374446435.8
xylose isomeraseSB96558_4538Not AvailableNegative4343816 - 434513849677.6
d-xylose abc transporter, d-xylose-binding proteinSB96558_4539Not AvailablePositive4345504 - 434649635722.1
transposase dde domain proteinSB96558_4540Not AvailableNegative4346660 - 434717519247.2
xylose import atp-binding protein xylgSB96558_4541Not AvailablePositive4347513 - 43476595439.68
branched-chain amino acid transport system / permease component family proteinSB96558_4542Not AvailablePositive4347637 - 434881841061.5

Displaying genes 4761 – 4770 of 5645 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.