Shigella boydii 965-58

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Shigella

Description

Shigella boydii 965-58 is a Gram-negative, rod-shaped bacterium that primarily exhibits a cell arrangement of singles and pairs. It thrives optimally at 37.0°C, suggesting a close association with warm-blooded hosts. This microbe is classified as a chemoorganotroph, indicating its reliance on organic compounds as an energy source, which aligns with its habitat being host-associated. Furthermore, S. boydii 965-58 is a facultative anaerobe, allowing it to adapt to varying oxygen levels within its host environment. The traits of S. boydii 965-58 highlight its specialized ecological niche within host organisms, where it likely competes for nutrients and interacts with the host's microbiota. Its ability to thrive at physiological temperatures and utilize organic substrates efficiently suggests that it may play a role in certain metabolic processes within the gut or associated tissues of its host. The facultative anaerobic nature of this strain also indicates its potential for survival and growth in diverse oxygen conditions, possibly allowing it to colonize different ecological niches within the host's gastrointestinal tract. Studying such traits in S. boydii 965-58 could provide insights into its ecological dynamics and interactions with both host and microbial community members in its environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusShigella
SpeciesShigella boydii
Strain965-58

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Shigella boydii 965-58
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Shigella boydii 965-58 gss96558.contig.95, whole genome shotgun

Gene Summary

Adenine Count

1275803 bp

Thymine Count

1282878 bp

Guanine Count

1313556 bp

Cytosine Count

1312359 bp

Genome Length

5184598 bp

Protein-coding Genes

5133 genes

Non-Coding Genes

512 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protein yrdaSB96558_4203Not AvailablePositive4049123 - 40493147147.47
hypothetical proteinSB96558_4204Not AvailableNegative4049290 - 40494636742.65
shikimate dehydrogenaseSB96558_4205Not AvailableNegative4049544 - 405036229451.4
trna threonylcarbamoyladenosine biosynthesis protein rimnSB96558_4206Not AvailableNegative4050367 - 405093920657.7
hypothetical proteinSB96558_4207Not AvailableNegative4051515 - 405192816039.2
dna protecting protein dpraSB96558_4208Not AvailableNegative4051960 - 405308440966.3
peptide deformylaseSB96558_4209Not AvailablePositive4053214 - 405372319329.6
methionyl-trna formyltransferaseSB96558_4210Not AvailablePositive4053738 - 405468534169.5
ribosomal rna small subunit methyltransferase bSB96558_4211Not AvailablePositive4054731 - 405602048375.3
trk system potassium uptake protein trkaSB96558_4212Not AvailablePositive4056042 - 405741850370.8

Displaying genes 4431 – 4440 of 5645 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.