Shigella boydii 965-58

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Shigella

Description

Shigella boydii 965-58 is a Gram-negative, rod-shaped bacterium that primarily exhibits a cell arrangement of singles and pairs. It thrives optimally at 37.0°C, suggesting a close association with warm-blooded hosts. This microbe is classified as a chemoorganotroph, indicating its reliance on organic compounds as an energy source, which aligns with its habitat being host-associated. Furthermore, S. boydii 965-58 is a facultative anaerobe, allowing it to adapt to varying oxygen levels within its host environment. The traits of S. boydii 965-58 highlight its specialized ecological niche within host organisms, where it likely competes for nutrients and interacts with the host's microbiota. Its ability to thrive at physiological temperatures and utilize organic substrates efficiently suggests that it may play a role in certain metabolic processes within the gut or associated tissues of its host. The facultative anaerobic nature of this strain also indicates its potential for survival and growth in diverse oxygen conditions, possibly allowing it to colonize different ecological niches within the host's gastrointestinal tract. Studying such traits in S. boydii 965-58 could provide insights into its ecological dynamics and interactions with both host and microbial community members in its environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusShigella
SpeciesShigella boydii
Strain965-58

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Shigella boydii 965-58
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Shigella boydii 965-58 gss96558.contig.95, whole genome shotgun

Gene Summary

Adenine Count

1275803 bp

Thymine Count

1282878 bp

Guanine Count

1313556 bp

Cytosine Count

1312359 bp

Genome Length

5184598 bp

Protein-coding Genes

5133 genes

Non-Coding Genes

512 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sugar fermentation stimulation protein bSB96558_4096Not AvailablePositive3948894 - 394917210476.5
udp-n-acetylglucosamine 1-carboxyvinyltransferaseSB96558_4097Not AvailableNegative3949220 - 395047944820.4
hypothetical proteinSB96558_4098Not AvailableNegative3950534 - 39507889452.29
putative phospholipid abc transporter-binding protein mlabSB96558_4099Not AvailableNegative3950948 - 39512209862.01
putative phospholipid-binding protein mlacSB96558_4100Not AvailableNegative3951241 - 395187623964.0
putative phospholipid abc transporter-binding protein mladSB96558_4101Not AvailableNegative3951895 - 395241918450.0
putative phospholipid abc transporter permease protein mlaeSB96558_4102Not AvailableNegative3952450 - 395323227865.0
putative phospholipid import atp-binding protein mlafSB96558_4103Not AvailableNegative3953240 - 395404929098.6
inner membrane protein yrbgSB96558_4104Not AvailablePositive3954259 - 395523634783.9
putative isomeraseSB96558_4105Not AvailablePositive3955250 - 395623635197.4

Displaying genes 4331 – 4340 of 5645 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.