Shigella boydii 965-58

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Shigella

Description

Shigella boydii 965-58 is a Gram-negative, rod-shaped bacterium that primarily exhibits a cell arrangement of singles and pairs. It thrives optimally at 37.0°C, suggesting a close association with warm-blooded hosts. This microbe is classified as a chemoorganotroph, indicating its reliance on organic compounds as an energy source, which aligns with its habitat being host-associated. Furthermore, S. boydii 965-58 is a facultative anaerobe, allowing it to adapt to varying oxygen levels within its host environment. The traits of S. boydii 965-58 highlight its specialized ecological niche within host organisms, where it likely competes for nutrients and interacts with the host's microbiota. Its ability to thrive at physiological temperatures and utilize organic substrates efficiently suggests that it may play a role in certain metabolic processes within the gut or associated tissues of its host. The facultative anaerobic nature of this strain also indicates its potential for survival and growth in diverse oxygen conditions, possibly allowing it to colonize different ecological niches within the host's gastrointestinal tract. Studying such traits in S. boydii 965-58 could provide insights into its ecological dynamics and interactions with both host and microbial community members in its environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusShigella
SpeciesShigella boydii
Strain965-58

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Shigella boydii 965-58
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Shigella boydii 965-58 gss96558.contig.95, whole genome shotgun

Gene Summary

Adenine Count

1275803 bp

Thymine Count

1282878 bp

Guanine Count

1313556 bp

Cytosine Count

1312359 bp

Genome Length

5184598 bp

Protein-coding Genes

5133 genes

Non-Coding Genes

512 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinSB96558_1195Not AvailablePositive1219890 - 12200124422.42
bifunctional adenosylcobalamin biosynthesis protein cobuSB96558_1196Not AvailablePositive1220335 - 122070913829.6
cobalamin 5'-phosphate synthaseSB96558_1197Not AvailablePositive1220706 - 122144926417.4
nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferaseSB96558_1198Not AvailablePositive1221461 - 122254036961.3
putative l,d-transpeptidase erfk/srfkSB96558_1199Not AvailablePositive1222605 - 122353734413.1
Trna-asnNot AvailableNot AvailablePositive1223593 - 1223668Not Available
nitrogen assimilation regulatory protein nacSB96558_1201Not AvailablePositive1223994 - 122491132837.0
hth-type transcriptional regulator cblSB96558_1202Not AvailablePositive1225013 - 122596335858.0
Trna-asnNot AvailableNot AvailablePositive1226001 - 1226076Not Available
mate efflux family proteinSB96558_1204Not AvailablePositive1226270 - 122772452816.1

Displaying genes 1651 – 1660 of 5645 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.