Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | OM5 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5 plasmid pOC167, complete sequence.
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type i secretion system permease/atpase | OCA5_RS17175 | Not Available | Positive | 19877 - 21604 | 61525.2 |
| hlyd family type i secretion periplasmic adaptor subunit | OCA5_RS17180 | Not Available | Positive | 21601 - 22911 | 48336.4 |
| imua family protein | OCA5_RS17185 | Not Available | Positive | 23133 - 23894 | 26186.5 |
| duf6504 family protein | OCA5_RS17190 | Not Available | Positive | 23809 - 25332 | 55241.4 |
| sos response-associated peptidase | OCA5_RS17195 | Not Available | Positive | 25329 - 25667 | 12176.6 |
| transporter | OCA5_RS17200 | Not Available | Positive | 26001 - 26966 | 33897.1 |
| mhyt domain-containing protein | OCA5_RS17210 | Not Available | Positive | 27504 - 28712 | 42867.0 |
| carbon monoxide dehydrogenase medium subunit | OCA5_RS17215 | Not Available | Positive | 28882 - 29748 | 30242.7 |
| carbon monoxide dehydrogenase small subunit | OCA5_RS17220 | Not Available | Positive | 29767 - 30267 | 17793.5 |
| aerobic carbon-monoxide dehydrogenase large subunit | OCA5_RS17225 | Not Available | Positive | 30264 - 32693 | 88744.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
