Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | OM5 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5 plasmid pHCG3, complete sequence.
Gene Summary
Adenine Count
26019 bp
Thymine Count
26467 bp
Guanine Count
41016 bp
Cytosine Count
39555 bp
Genome Length
133057 bp
Protein-coding Genes
127 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| plasmid partitioning protein repa | OCA5_RS17705 | Not Available | Positive | 101 - 1324 | 45066.8 |
| plasmid partitioning protein repb | OCA5_RS17710 | Not Available | Positive | 1321 - 2304 | 36189.4 |
| plasmid replication protein repc | OCA5_RS17715 | Not Available | Positive | 2498 - 3730 | 44890.9 |
| single-stranded dna-binding protein | OCA5_RS17720 | Not Available | Positive | 4349 - 4681 | 12435.8 |
| helix-turn-helix domain-containing protein | OCA5_RS17725 | Not Available | Negative | 4742 - 5158 | 15426.5 |
| helix-turn-helix domain-containing protein | OCA5_RS17730 | Not Available | Negative | 5223 - 5534 | 11486.6 |
| plasmid replication protein repc | OCA5_RS17735 | Not Available | Positive | 5848 - 7080 | 44587.0 |
| hypothetical protein | OCA5_RS19560 | Not Available | Negative | 7172 - 7588 | 15463.3 |
| para family protein | OCA5_RS17740 | Not Available | Negative | 7585 - 8286 | 25555.3 |
| hypothetical protein | OCA5_RS17745 | Not Available | Positive | 8735 - 9307 | 20361.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
