Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | OM5 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5 plasmid pOC167, complete sequence.
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| plasmid partitioning protein repb | OCA5_RS17075 | Not Available | Positive | 1312 - 2367 | 37952.1 |
| plasmid replication protein repc | OCA5_RS17080 | Not Available | Positive | 2716 - 4215 | 54422.5 |
| site-specific integrase | OCA5_RS17085 | Not Available | Negative | 4224 - 5402 | 42670.8 |
| duf1403 family protein | OCA5_RS17090 | Not Available | Positive | 5488 - 6429 | 33815.7 |
| smc-scp complex subunit scpb | OCA5_RS17095 | Not Available | Positive | 6431 - 7096 | 24488.4 |
| hypothetical protein | OCA5_RS17100 | Not Available | Positive | 7147 - 7446 | 11351.5 |
| hypothetical protein | OCA5_RS17105 | Not Available | Positive | 7571 - 8176 | 22327.8 |
| had family hydrolase | OCA5_RS17110 | Not Available | Negative | 8365 - 9075 | 26062.1 |
| cupin domain-containing protein | OCA5_RS19205 | Not Available | Negative | 9101 - 9541 | 16004.9 |
| discoidin domain-containing protein | OCA5_RS17120 | Not Available | Negative | 9538 - 10092 | 20568.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
