Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | OM5 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5 plasmid pOC167, complete sequence.
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iv secretion system protein | OCA5_RS18265 | Not Available | Negative | 114475 - 115191 | 24523.0 |
| hypothetical protein | OCA5_RS18270 | Not Available | Negative | 115203 - 116099 | 29588.7 |
| virb4 family type iv secretion system protein | OCA5_RS18275 | Not Available | Negative | 116096 - 118507 | 89443.9 |
| type iv secretion system protein virb3 | OCA5_RS18280 | Not Available | Negative | 118517 - 118813 | 11165.9 |
| trbc/virb2 family protein | OCA5_RS18285 | Not Available | Negative | 118810 - 119112 | 10411.8 |
| lytic transglycosylase domain-containing protein | OCA5_RS18290 | Not Available | Negative | 119126 - 119860 | 26098.9 |
| hypothetical protein | OCA5_RS18295 | Not Available | Positive | 119962 - 120456 | 16701.8 |
| thermonuclease family protein | OCA5_RS18300 | Not Available | Positive | 120458 - 121069 | 21690.9 |
| single-stranded dna-binding protein | OCA5_RS18305 | Not Available | Positive | 121082 - 121420 | 12377.5 |
| thermonuclease family protein | OCA5_RS18310 | Not Available | Positive | 121407 - 121997 | 21308.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
