Afipia carboxidovorans OM5

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Nitrobacteraceae

Genus

Afipia

Description

Afipia carboxidovorans OM5 is a Gram-negative, rod-shaped bacterium characterized by its ability to metabolize carbon monoxide as a chemolithoautotrophic energy source. This microbe thrives in diverse habitats, which suggests a remarkable adaptability to various environmental conditions. As an aerobe, A. carboxidovorans OM5 requires oxygen for growth, indicating its reliance on aerobic metabolic pathways to sustain its energy demands. The chemolithoautotrophic nature of A. carboxidovorans OM5 positions it uniquely within microbial communities, as it can utilize inorganic compounds for energy while fixing carbon dioxide for biomass production. This metabolic strategy not only allows it to occupy ecological niches where organic carbon may be limited but also contributes to the cycling of carbon and other nutrients, potentially influencing local ecosystem dynamics. Furthermore, the presence of A. carboxidovorans OM5 in multiple habitats raises intriguing questions about its ecological roles and interactions with other microbial species. Its capacity to utilize carbon monoxide may also suggest a potential involvement in biogeochemical cycles, particularly in environments where this gas is prevalent, such as in the aftermath of combustion processes. Understanding the specific contributions of A. carboxidovorans OM5 to its ecosystems could provide insights into microbial responses to environmental changes and the overall functionality of microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusAfipia
SpeciesAfipia carboxidovorans
StrainOM5

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Afipia carboxidovorans OM5
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceChemolithoautotroph
PathogenicityNot Available

Genome Summary

Afipia carboxidovorans OM5 plasmid pOC167, complete sequence.

Gene Summary

Adenine Count

32940 bp

Thymine Count

32945 bp

Guanine Count

51526 bp

Cytosine Count

49858 bp

Genome Length

167269 bp

Protein-coding Genes

159 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hit domain-containing proteinOCA5_RS02975Not AvailableNegative620930 - 62134315414.7
Ncrna_class:srp_rnaNot AvailableNot AvailablePositive621558 - 621654Not Available
dna polymerase iii subunit gamma/tauOCA5_RS02980Not AvailablePositive621749 - 62364768520.7
ybab/ebfc family nucleoid-associated proteinOCA5_RS02985Not AvailablePositive623662 - 62397911441.1
recombination mediator recrOCA5_RS02990Not AvailablePositive623981 - 62458621596.2
ampg family muropeptide mfs transporterOCA5_RS02995Not AvailableNegative624587 - 62595748180.2
dna recombination protein rmucOCA5_RS03000Not AvailableNegative626044 - 62724644254.6
peptide deformylaseOCA5_RS03005Not AvailablePositive627386 - 62790119368.5
methionyl-trna formyltransferaseOCA5_RS03010Not AvailablePositive628049 - 62898133182.8
trna pseudouridine(38-40) synthase truaOCA5_RS03015Not AvailablePositive629157 - 62989427218.3

Displaying genes 1021 – 1030 of 7526 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.