Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | OM5 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5 plasmid pOC167, complete sequence.
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hit domain-containing protein | OCA5_RS02975 | Not Available | Negative | 620930 - 621343 | 15414.7 |
| Ncrna_class:srp_rna | Not Available | Not Available | Positive | 621558 - 621654 | Not Available |
| dna polymerase iii subunit gamma/tau | OCA5_RS02980 | Not Available | Positive | 621749 - 623647 | 68520.7 |
| ybab/ebfc family nucleoid-associated protein | OCA5_RS02985 | Not Available | Positive | 623662 - 623979 | 11441.1 |
| recombination mediator recr | OCA5_RS02990 | Not Available | Positive | 623981 - 624586 | 21596.2 |
| ampg family muropeptide mfs transporter | OCA5_RS02995 | Not Available | Negative | 624587 - 625957 | 48180.2 |
| dna recombination protein rmuc | OCA5_RS03000 | Not Available | Negative | 626044 - 627246 | 44254.6 |
| peptide deformylase | OCA5_RS03005 | Not Available | Positive | 627386 - 627901 | 19368.5 |
| methionyl-trna formyltransferase | OCA5_RS03010 | Not Available | Positive | 628049 - 628981 | 33182.8 |
| trna pseudouridine(38-40) synthase trua | OCA5_RS03015 | Not Available | Positive | 629157 - 629894 | 27218.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
