Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111

rodNon-motileAerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Streptosporangiales

Family

Nocardiopsidaceae

Genus

Nocardiopsis

Description

This soil bacterium has been known by a number of other names since its isolation (among them Nocardiopsis antarctica and Streptomyces flavidofuscus). Cells grow aerobically as hyphae and form elongated, smooth irregularly sized spores. N.dassonvillei has been isolated from a wide variety of habitats, including soil, glaciers, mildewed fodder, salterns and patients with conjunctivitis or cholangitis. This strain is the type strain, isolated in 1904, but it is not clear what its geographical and ecological origins are. It is an occasional human pathogen, causing actinomycetoma, which are bacteria-filled abcesses (adapted from http://standardsingenomics.org/index.php/sigen/article/view/sigs.1373474). (EBI Integr8)

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderStreptosporangiales
FamilyNocardiopsidaceae
GenusNocardiopsis
SpeciesNocardiopsis dassonvillei
StrainDSM 43111

Profile

Physiology
Gram staining propertiesGram-positive
Shaperod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityYes

Genome Summary

Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome

Gene Summary

Adenine Count

108268 bp

Thymine Count

108911 bp

Guanine Count

277443 bp

Cytosine Count

280732 bp

Genome Length

775354 bp

Protein-coding Genes

699 genes

Non-Coding Genes

16 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ammonium transporterNDAS_RS01130Not AvailablePositive278655 - 27999546233.4
hypothetical proteinNDAS_RS01135Not AvailablePositive280395 - 28160941681.5
signal recognition particle proteinNDAS_RS01140Not AvailablePositive281771 - 28336657456.4
30s ribosomal protein s16NDAS_RS01145Not AvailablePositive283769 - 28423316917.3
rna-binding proteinNDAS_RS01150Not AvailablePositive284235 - 2844778877.95
ribosome maturation factor rimmNDAS_RS01155Not AvailablePositive284615 - 28512717712.9
trna (guanosine(37)-n1)-methyltransferase trmdNDAS_RS01160Not AvailablePositive285139 - 28590327893.0
50s ribosomal protein l19NDAS_RS01165Not AvailablePositive286090 - 28643413245.1
signal peptidase iNDAS_RS01170Not AvailablePositive286527 - 28740231341.3
duf2469 domain-containing proteinNDAS_RS01175Not AvailablePositive287609 - 28793812989.2

Displaying genes 941 – 950 of 5606 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

7 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00024581D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranosideC14H25NO11Chemical structure of 1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranosideNot available
Average383.35Da
Monoisotopic383.142760629Da
BASm00037771D-myo-inositol 2-(L-cysteinylamino)-2-deoxy-alpha-D-glucopyranosideC15H29N2O11SChemical structure of 1D-myo-inositol 2-(L-cysteinylamino)-2-deoxy-alpha-D-glucopyranosideNot available
Average445.46Da
Monoisotopic445.1486574Da
BASm00037801D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside 3-phosphateC14H24NO14PChemical structure of 1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside 3-phosphateNot available
Average461.314Da
Monoisotopic461.094538615Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0016750X-14847C12H23NO10Chemical structure of X-14847NULL
Average341.313Da
Monoisotopic341.132195945Da
BASm0017265Uridine diphosphate-N-acetylglucosamineC17H27N3O17P2Chemical structure of Uridine diphosphate-N-acetylglucosamine528-04-1
Average607.3537Da
Monoisotopic607.081569477Da

Displaying 1–7 of 7 metabolites

Health Effects

No health effects information available for this bacterium.