Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111

rodNon-motileAerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Streptosporangiales

Family

Nocardiopsidaceae

Genus

Nocardiopsis

Description

This soil bacterium has been known by a number of other names since its isolation (among them Nocardiopsis antarctica and Streptomyces flavidofuscus). Cells grow aerobically as hyphae and form elongated, smooth irregularly sized spores. N.dassonvillei has been isolated from a wide variety of habitats, including soil, glaciers, mildewed fodder, salterns and patients with conjunctivitis or cholangitis. This strain is the type strain, isolated in 1904, but it is not clear what its geographical and ecological origins are. It is an occasional human pathogen, causing actinomycetoma, which are bacteria-filled abcesses (adapted from http://standardsingenomics.org/index.php/sigen/article/view/sigs.1373474). (EBI Integr8)

Taxonomy

Kingdom	Bacillati
Phylum	Actinomycetota
Class	Actinomycetes
Order	Streptosporangiales
Family	Nocardiopsidaceae
Genus	Nocardiopsis
Species	Nocardiopsis dassonvillei
Strain	DSM 43111

Profile

Physiology
Gram staining properties	Gram-positive
Shape	rod
Mobility	No
Flagellar presence	Yes
Number of membranes	1

AI-generated image based on bacteria physiology

Ecology, Host, and Life Cycle
Oxygen requirements	Aerobic
Optimal temperature	Not Available
Temperature range	Mesophilic
Habitat	Multiple
Biotic relationship	Free living
Host(s)	Not Available
Cell arrangement	Not Available
Sporulation	Not Available
Energy source	Not Available
Pathogenicity	Yes

Genome Summary

Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome

NC_014211.1 NC_014210.1

Gene Summary

Adenine Count

108268 bp

Thymine Count

108911 bp

Guanine Count

277443 bp

Cytosine Count

280732 bp

Genome Length

775354 bp

Protein-coding Genes

699 genes

Non-Coding Genes

16 genes

# of Chromosomes/Plasmids

Genes

Name	Locus Tag	UniProt ID	Strand Orientation	Gene Start/End	Protein Molecular Weight
30s ribosomal protein s17	NDAS_RS25390	Not Available	Positive	282386 - 282658	10455.6
50s ribosomal protein l14	NDAS_RS25395	Not Available	Positive	282762 - 283130	13260.3
50s ribosomal protein l24	NDAS_RS25400	Not Available	Positive	283134 - 283439	10873.2
50s ribosomal protein l5	NDAS_RS25405	Not Available	Positive	283439 - 284014	21220.8
type z 30s ribosomal protein s14	NDAS_RS25410	Not Available	Positive	284028 - 284213	7060.87
30s ribosomal protein s8	NDAS_RS25415	Not Available	Positive	284484 - 284882	14523.8
50s ribosomal protein l6	NDAS_RS25420	Not Available	Positive	284900 - 285436	19191.4
50s ribosomal protein l18	NDAS_RS25425	Not Available	Positive	285439 - 285819	13566.2
30s ribosomal protein s5	NDAS_RS25430	Not Available	Positive	285869 - 286471	20654.2
50s ribosomal protein l30	NDAS_RS25435	Not Available	Positive	286474 - 286659	6620.17

Displaying genes 271 – 280 of 5606 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolite ID	Metabolite name	CAS number	Average mass Monoisotopic mass
BASm0001865	diphosphateHO7P2	Not available	Average174.95Da Monoisotopic174.9213971Da
BASm0002458	1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranosideC14H25NO11	Not available	Average383.35Da Monoisotopic383.142760629Da
BASm0003777	1D-myo-inositol 2-(L-cysteinylamino)-2-deoxy-alpha-D-glucopyranosideC15H29N2O11S	Not available	Average445.46Da Monoisotopic445.1486574Da
BASm0003780	1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside 3-phosphateC14H24NO14P	Not available	Average461.314Da Monoisotopic461.094538615Da
BASm0014032	Acetic acidC2H4O2	`64-19-7`	Average60.052Da Monoisotopic60.021129372Da
BASm0016750	X-14847C12H23NO10	`NULL`	Average341.313Da Monoisotopic341.132195945Da
BASm0017265	Uridine diphosphate-N-acetylglucosamineC17H27N3O17P2	`528-04-1`	Average607.3537Da Monoisotopic607.081569477Da

Displaying 1–7 of 7 metabolites

Health Effects

No health effects information available for this bacterium.