Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111

rodNon-motileAerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Streptosporangiales

Family

Nocardiopsidaceae

Genus

Nocardiopsis

Description

This soil bacterium has been known by a number of other names since its isolation (among them Nocardiopsis antarctica and Streptomyces flavidofuscus). Cells grow aerobically as hyphae and form elongated, smooth irregularly sized spores. N.dassonvillei has been isolated from a wide variety of habitats, including soil, glaciers, mildewed fodder, salterns and patients with conjunctivitis or cholangitis. This strain is the type strain, isolated in 1904, but it is not clear what its geographical and ecological origins are. It is an occasional human pathogen, causing actinomycetoma, which are bacteria-filled abcesses (adapted from http://standardsingenomics.org/index.php/sigen/article/view/sigs.1373474). (EBI Integr8)

Taxonomy

Kingdom	Bacillati
Phylum	Actinomycetota
Class	Actinomycetes
Order	Streptosporangiales
Family	Nocardiopsidaceae
Genus	Nocardiopsis
Species	Nocardiopsis dassonvillei
Strain	DSM 43111

Profile

Physiology
Gram staining properties	Gram-positive
Shape	rod
Mobility	No
Flagellar presence	Yes
Number of membranes	1

AI-generated image based on bacteria physiology

Ecology, Host, and Life Cycle
Oxygen requirements	Aerobic
Optimal temperature	Not Available
Temperature range	Mesophilic
Habitat	Multiple
Biotic relationship	Free living
Host(s)	Not Available
Cell arrangement	Not Available
Sporulation	Not Available
Energy source	Not Available
Pathogenicity	Yes

Genome Summary

Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome

NC_014211.1 NC_014210.1

Gene Summary

Adenine Count

108268 bp

Thymine Count

108911 bp

Guanine Count

277443 bp

Cytosine Count

280732 bp

Genome Length

775354 bp

Protein-coding Genes

699 genes

Non-Coding Genes

16 genes

# of Chromosomes/Plasmids

Genes

Name	Locus Tag	UniProt ID	Strand Orientation	Gene Start/End	Protein Molecular Weight
2-oxoacid:ferredoxin oxidoreductase subunit beta	NDAS_RS25150	Not Available	Negative	231122 - 232213	39295.4
2-oxoacid:acceptor oxidoreductase subunit alpha	NDAS_RS25155	Not Available	Negative	232206 - 234056	65724.5
m48 family metalloprotease	NDAS_RS25160	Not Available	Positive	234583 - 235446	30963.1
yajq family cyclic di-gmp-binding protein	NDAS_RS25165	Not Available	Negative	235591 - 236088	18550.0
Trna-tyr	Not Available	Not Available	Positive	236321 - 236402	Not Available
hypothetical protein	NDAS_RS25175	Not Available	Positive	237210 - 237461	8218.99
hypothetical protein	NDAS_RS25180	Not Available	Positive	237518 - 237769	8206.76
hypothetical protein	NDAS_RS25185	Not Available	Positive	237780 - 238043	8733.33
hypothetical protein	NDAS_RS25190	Not Available	Positive	238054 - 238380	10858.6
hypothetical protein	NDAS_RS25195	Not Available	Positive	238518 - 239072	19902.4

Displaying genes 221 – 230 of 5606 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolite ID	Metabolite name	CAS number	Average mass Monoisotopic mass
BASm0001865	diphosphateHO7P2	Not available	Average174.95Da Monoisotopic174.9213971Da
BASm0002458	1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranosideC14H25NO11	Not available	Average383.35Da Monoisotopic383.142760629Da
BASm0003777	1D-myo-inositol 2-(L-cysteinylamino)-2-deoxy-alpha-D-glucopyranosideC15H29N2O11S	Not available	Average445.46Da Monoisotopic445.1486574Da
BASm0003780	1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside 3-phosphateC14H24NO14P	Not available	Average461.314Da Monoisotopic461.094538615Da
BASm0014032	Acetic acidC2H4O2	`64-19-7`	Average60.052Da Monoisotopic60.021129372Da
BASm0016750	X-14847C12H23NO10	`NULL`	Average341.313Da Monoisotopic341.132195945Da
BASm0017265	Uridine diphosphate-N-acetylglucosamineC17H27N3O17P2	`528-04-1`	Average607.3537Da Monoisotopic607.081569477Da

Displaying 1–7 of 7 metabolites

Health Effects

No health effects information available for this bacterium.