Desulfovibrio vulgaris DP4

Gram-negativeRodMotileAnaerobe

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfovibrionia

Order

Desulfovibrionales

Family

Desulfovibrionaceae

Genus

Nitratidesulfovibrio

Description

Desulfovibrio vulgaris subsp. vulgaris (strain DP4) is an anaerobic bacterium phylogenetically associated with the delta subdivision of the Proteobacteria. Desulfovibrio vulgaris is a sulfate reducer commonly found in a variety of soil and aquatic environments. It respires by electron transfer using the heme group in c-type cytochromes, and can corrode metal by cathodic depolarization using the same process. Its preferred carbon substrates are lactate and pyruvate. The ability of this species to reduce Uranium (VI)ox to Uranium (IV)red makes it a good candidate for bioremediation of sites with uranium-contaminated groundwater. Metal corrosion, a problem that is partly the result of the collective activity of these bacteria, produces billions of dollars of losses each year to the petroleum industry. These organisms are also responsible for the production of poisonous hydrogen sulfide gas in marine sediments and in terrestrial environments such as drilling sites for petroleum products. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusNitratidesulfovibrio
SpeciesNitratidesulfovibrio vulgaris
StrainDP4

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Desulfovibrio vulgaris DP4
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Desulfovibrio vulgaris DP4


Gene Summary

Adenine Count

639427 bp

Thymine Count

641428 bp

Guanine Count

1089813 bp

Cytosine Count

1092219 bp

Genome Length

3462887 bp

Protein-coding Genes

2821 genes

Non-Coding Genes

206 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Hypothetical proteinDVUL_RS16220Not AvailableNegative1068859 - 106950624306.5
Gp70DVUL_RS04470Not AvailableNegative1069931 - 107030212976.4
Gp11DVUL_RS04475Not AvailableNegative1070308 - 107068213987.8
Hypothetical proteinDVUL_RS04480Not AvailableNegative1070669 - 107106114169.0
Putative head-tail adaptorDVUL_RS04485Not AvailableNegative1071045 - 107137412261.9
Hypothetical protein gp6DVUL_RS04490Not AvailableNegative1071377 - 107194020625.0
hypothetical proteinDVUL_RS18000Not AvailableNegative1071937 - 10721136467.5
Major capsid protein precursorDVUL_RS04495Not AvailableNegative1072159 - 107338244212.4
Putative prohead proteaseDVUL_RS04500Not AvailableNegative1073342 - 107409426756.1
Portal proteinDVUL_RS04505Not AvailableNegative1074075 - 107530445652.4

Displaying genes 1 – 10 of 3027 in total

Metabolites

1704 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da

Displaying 1–10 of 1704 metabolites

Health Effects

No health effects information available for this bacterium.