Nitratidesulfovibrio vulgaris DP4

Gram-negativeRodMotileAnaerobe

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfovibrionia

Order

Desulfovibrionales

Family

Desulfovibrionaceae

Genus

Nitratidesulfovibrio

Description

Nitratidesulfovibrio vulgaris DP4 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This microbe thrives in a variety of habitats, demonstrating its adaptability to diverse environmental conditions. It is classified as an anaerobe, indicating that it does not require oxygen for growth and may even be inhibited by its presence. The optimal growth temperature for N. vulgaris DP4 is 25.0°C, suggesting a preference for moderate thermal conditions commonly found in many natural environments. The ability of N. vulgaris DP4 to occupy multiple habitats reflects its potential role in various biogeochemical cycles, particularly in environments where sulfate and nitrate are present. Its anaerobic nature may enable it to contribute to the reduction of these compounds, participating in processes such as denitrification or sulfate reduction. As such, N. vulgaris DP4 may play a significant role in nutrient cycling within anaerobic ecosystems, influencing the availability of nitrogen and sulfur compounds in these environments. This functional capability underscores the importance of N. vulgaris DP4 in maintaining ecological balance and supporting microbial diversity in anaerobic habitats.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusNitratidesulfovibrio
SpeciesNitratidesulfovibrio vulgaris
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Nitratidesulfovibrio vulgaris DP4
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nitratidesulfovibrio vulgaris DP4


Gene Summary

Adenine Count

33985 bp

Thymine Count

34125 bp

Guanine Count

64729 bp

Cytosine Count

65665 bp

Genome Length

198504 bp

Protein-coding Genes

147 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypothetical proteinDVUL_RS15080Not Available-180 - 3527114709.0
para family proteinDVUL_RS15085Not Available-3578 - 439630169.2
type ii toxin-antitoxin system hipa family toxinDVUL_RS15090Not Available-6044 - 733947202.8
helix-turn-helix domain-containing proteinDVUL_RS15095Not Available-7329 - 772114046.9
substrate-binding periplasmic proteinDVUL_RS15100Not Available+8234 - 897127529.4
hypothetical proteinDVUL_RS15105Not Available-9180 - 1091661589.0
mfs transporterDVUL_RS15110Not Available-10948 - 13911101510.0
abc transporter substrate-binding proteinDVUL_RS15115Not Available-13898 - 1513644883.6
cest family type iii secretion system chaperoneDVUL_RS15120Not Available-15699 - 1616016012.1
duf3626 domain-containing proteinDVUL_RS15125Not Available-16171 - 19896132656.0

Displaying genes 1 – 10 of 147 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1605 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da
BASm0001462ubiquinone-0C9H10O4Chemical structure of ubiquinone-0605-94-7
Average182.1733Da
Monoisotopic182.057908808Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001691hydrogenselenideHSeChemical structure of hydrogenselenideNot available
Average79.98Da
Monoisotopic80.924896Da
BASm00016962-heptyl-3-hydroxy-4(1H)-quinoloneC16H21NO2Chemical structure of 2-heptyl-3-hydroxy-4(1H)-quinoloneNot available
Average259.349Da
Monoisotopic259.15722892Da

Displaying 1–10 of 1605 metabolites