Citrobacter koseri ATCC BAA-895

Gram-negativeRodMotileFacultatively anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter koseri ATCC BAA-895 is a gram-negative, rod-shaped bacterium that thrives at mesophilic temperatures, prefers to utilize organic compounds as a carbon source, and is classified as a facultative anaerobe. This species belongs to the Enterobacteriaceae family and is commonly found in the human gut, as well as in various environmental sources such as soil and water.The gram-negative characteristic of C. koseri signifies a thinner peptidoglycan layer and an outer membrane containing lipopolysaccharides, which contributes to its virulence. Its rod shape is typical of many Enterobacteriaceae, providing mobility and surface area for nutrient absorption. As a mesophilic organism, C. koseri flourishes between 30°C and 37°C, making it well-suited for growth within human body temperatures. The facultative anaerobic nature of this microbe allows it to adapt to both aerobic and anaerobic environments, giving it the flexibility to survive in various ecological niches. C. koseri is predominantly found in the intestinal tracts of humans and animals, where it plays a role in the gut microbiome. It can also be isolated from clinical specimens, particularly in immunocompromised patients, where it is associated with opportunistic infections. Pathogenic strains have been implicated in neonatal meningitis and other serious infections, emphasizing the importance of understanding this bacterium in clinical settings. Additionally, C. koseri exhibits biochemical versatility, which allows it to metabolize a wide range of substrates. This metabolic adaptability, coupled with its potential pathogenicity, makes it a significant subject of research within microbiology and infectious disease studies. Its ability to form biofilms may also contribute to its persistence in hospital environments, where it can pose a risk to vulnerable populations.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter koseri
StrainATCC BAA-895

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Citrobacter koseri ATCC BAA-895
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultatively anaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityYes

Genome Summary

Citrobacter koseri ATCC BAA-895 plasmid pCKO2, complete sequence.

Gene Summary

Adenine Count

1353 bp

Thymine Count

1376 bp

Guanine Count

1564 bp

Cytosine Count

1308 bp

Genome Length

5601 bp

Protein-coding Genes

12 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rop family plasmid primer rna-binding proteinCKO_RS21910Not AvailablePositive145 - 3246939.39
hypothetical proteinCKO_RS21915Not AvailableNegative352 - 88220562.6
mobc family replication-relaxation proteinCKO_RS21920Not AvailableNegative889 - 162027676.5
type iv secretory system conjugative dna transfer family proteinCKO_RS21925Not AvailableNegative1620 - 358472706.3
colicin release lysis proteinCKO_RS21930Not AvailableNegative5065 - 52145247.55
cloacin immunity family proteinCKO_RS21935Not AvailableNegative5299 - 55569994.72
colicin-like bacteriocin trnase domain-containing proteinCKO_RS21940Not AvailableNegative5566 - 725159240.3
exc2 family lipoproteinCKO_RS21945Not AvailablePositive7654 - 807315660.5
hypothetical proteinCKO_RS21950Not AvailablePositive8379 - 86429892.61
type ii toxin-antitoxin system rele/pare family toxinCKO_RS21955Not AvailablePositive8632 - 893111410.4

Displaying genes 1 – 10 of 4419 in total

Metabolites

2265 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 2265 metabolites

Health Effects

No health effects information available for this bacterium.