Flavobacterium psychrophilum

RodNon-motileaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium psychrophilum is a Gram-negative, rod-shaped bacterium that is psychrotolerant, thriving in cold temperatures, and is a Chemoheterotroph, requiring organic compounds for energy production, which it obtains through the breakdown of complex molecules, and can be found in various body sites of fish, including the skin, gills, and internal organs, of species such as salmon and trout, and is an Obligate Aerobe, requiring oxygen to survive. The Gram-negative characteristic is due to the composition of its cell wall, which contains a thin peptidoglycan layer and an outer membrane containing lipopolysaccharides. Its rod-shaped morphology allows it to move and colonize efficiently in its aquatic environment. As a psychrotolerant microbe, Flavobacterium psychrophilum can grow in a wide range of temperatures, but its optimal growth occurs in cold temperatures, typically below 15°C. Its chemoheterotrophic nature means that it relies on external sources of organic matter for energy and carbon, breaking down complex molecules such as proteins, carbohydrates, and fats. The bacterium's ability to inhabit various body sites of fish makes it a significant pathogen in aquaculture, causing diseases such as bacterial cold water disease and rainbow trout fry syndrome. Flavobacterium psychrophilum's obligate aerobic nature necessitates the presence of oxygen for its metabolic processes, and it is often found in well-oxygenated aquatic environments. The bacterium's ability to produce extracellular enzymes and toxins allows it to infect and cause disease in fish, and its presence has been detected in fish farms and wild fish populations around the world, highlighting the need for effective disease management strategies in aquaculture.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium psychrophilum
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium psychrophilum
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature15
Temperature rangePsychrophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Oncorhynchus mykiss, Salmonidae
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

MAG: Flavobacterium psychrophilum isolate S2_003_000_R2_17

Gene Summary

Adenine Count

1867458 bp

Thymine Count

1848403 bp

Guanine Count

1276374 bp

Cytosine Count

1278284 bp

Genome Length

6270519 bp

Protein-coding Genes

6212 genes

Non-Coding Genes

65 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinDI539_09475Not AvailablePositive1982718 - 198306213815.4
Serine-type dna invertase finDI539_09480Not AvailablePositive1983135 - 198376723597.8
hypothetical proteinDI539_09485Not AvailableNegative1983792 - 19839746902.02
hypothetical proteinDI539_09490Not AvailableNegative1983967 - 198494734801.4
hypothetical proteinDI539_09495Not AvailableNegative1985269 - 198561012669.3
hypothetical proteinDI539_09500Not AvailableNegative1985696 - 198613016961.2
hypothetical proteinDI539_09505Not AvailableNegative1986237 - 198664715204.3
hypothetical proteinDI539_09510Not AvailableNegative1986654 - 198706715205.1
hypothetical proteinDI539_09515Not AvailablePositive1987175 - 19874058407.43
AttrNot AvailableNot AvailablePositive1987232 - 1987243Not Available

Displaying genes 11 – 20 of 6277 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1 record
Metabolite IDMetabolite nameStructureCAS number
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da

Displaying 1–1 of 1 metabolites

Health Effects

Health ConditionRelationReference
Bacterial cold water diseaseCausesPMC12152302
Rainbow trout fry syndromeCausesPMC12152302

Displaying health effects 1 – 2 of 2 in total