Pseudobutyrivibrio ruminis

Gram-positiveMotileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Lachnospirales

Family

Lachnospiraceae

Genus

Pseudobutyrivibrio

Description

Pseudobutyrivibrio ruminis is a gram-negative, rod-shaped bacterium classified as a mesophile, thriving optimally at moderate temperatures typically between 30°C and 40°C. As a chemoheterotroph, it derives energy by breaking down organic compounds, primarily found in the gut of ruminant animals such as cattle and sheep, where it plays a crucial role in the digestive process. P. ruminis is an obligate anaerobe, meaning it cannot survive in the presence of oxygen, which is a characteristic shared among many microorganisms that inhabit the gastrointestinal tract. This bacterium is particularly known for its contribution to the fermentation of carbohydrates in the rumen, facilitating the breakdown of complex polysaccharides into short-chain fatty acids, which serve as vital energy sources for the host animal. It is also involved in the production of butyrate—a key metabolite that supports gut health and provides energy for colonocytes. The ability of Pseudobutyrivibrio ruminis to thrive in the anaerobic, nutrient-rich environment of the rumen highlights its adaptive strategies for survival and metabolic efficiency. Moreover, this microbe has been a focus of research due to its potential implications in livestock health and production efficiency. Studies have shown that manipulating the populations of ruminal microbes, including P. ruminis, may improve feed conversion ratios and reduce methane emissions, contributing to more sustainable agricultural practices. The varied interactions of Pseudobutyrivibrio ruminis with other microbial inhabitants in the rumen ecosystem underscore its ecological importance and potential for biotechnological applications in animal husbandry.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusPseudobutyrivibrio
SpeciesPseudobutyrivibrio ruminis
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature39
Temperature rangeMesophilic
HabitatAnimal intestinal microflora
Biotic relationshipNot Available
Host(s)Bos, Metazoa, Ovis aries
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Pseudobutyrivibrio ruminis strain JK10 contig000062, whole genome

Gene Summary

Adenine Count

886960 bp

Thymine Count

912208 bp

Guanine Count

548976 bp

Cytosine Count

584621 bp

Genome Length

2932765 bp

Protein-coding Genes

2628 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Trna-glyNot AvailableNot AvailablePositive56155 - 56225Not Available
Trna-argNot AvailableNot AvailablePositive56252 - 56325Not Available
Trna-hisNot AvailableNot AvailablePositive56353 - 56426Not Available
Trna-glnNot AvailableNot AvailablePositive56452 - 56523Not Available
Trna-lysNot AvailableNot AvailablePositive56577 - 56652Not Available
transcriptional regulatorCSX00_00315Not AvailablePositive57152 - 5744210927.2
type ii toxin-antitoxin system prevent-host-death family antitoxinCSX00_00320Not AvailablePositive57772 - 5803510149.0
cytotoxic translational repressor of toxin-antitoxin stability systemCSX00_00325Not AvailablePositive58028 - 5833011706.1
aldo/keto reductaseCSX00_00330Not AvailablePositive58660 - 5984145008.1
threonine-phosphate decarboxylaseCSX00_00335Not AvailableNegative60071 - 6115941257.6

Displaying genes 61 – 70 of 2677 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

3 records
Metabolite IDMetabolite nameStructureCAS number
BASm0039640Streptococcus constellatusNot available7296-56-2Not available
BASm0039676Clostridium nexileNot availableNot availableNot available
BASm0039735Streptococcus anginosusNot availableNot availableNot available

Displaying 1–3 of 3 metabolites

Health Effects

No health effects information available for this bacterium.