Citrobacter amalonaticus

Gram-negativeRodFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter amalonaticus is a Gram-negative, rod-shaped bacterium that thrives in moderate temperatures, classified as a mesophilic organism. As a chemoheterotroph, it derives energy and carbon from organic compounds, which it metabolizes in various environments. This microbe is typically found in the gastrointestinal tracts of humans and animals, as well as in soil and water, indicating its widespread presence in the ecosystem. The Gram-negative characteristic of C. amalonaticus signifies that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which contains lipopolysaccharides that contribute to its pathogenic potential and immune evasion. Its rod shape allows for efficient movement and colonization in diverse environments, enhancing its survival abilities. As a mesophile, C. amalonaticus prefers moderate temperatures, typically between 20°C and 45°C, making it well-suited for life in warm-blooded hosts. Being a chemoheterotroph, C. amalonaticus relies on organic compounds for both energy and carbon, allowing it to thrive in nutrient-rich environments such as the intestinal flora. This microbe is classified as a facultative anaerobe, which means it can grow in both the presence and absence of oxygen. This adaptability is crucial for its survival in the host gut, where oxygen levels may vary significantly. Citrobacter amalonaticus is also recognized for its potential pathogenicity, as it can be associated with urinary tract infections and other opportunistic infections, particularly in immunocompromised individuals. Its ability to produce certain enzymes, such as urease, contributes to its pathogenic profile. Furthermore, the microbe plays a role in biogeochemical cycling, particularly in nitrogen transformations, highlighting its ecological significance beyond human health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter amalonaticus
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter amalonaticus
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgut
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter amalonaticus strain FDAARGOS_122 chromosome, complete

Gene Summary

Adenine Count

1134906 bp

Thymine Count

1134349 bp

Guanine Count

1314936 bp

Cytosine Count

1320528 bp

Genome Length

4904719 bp

Protein-coding Genes

4435 genes

Non-Coding Genes

174 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Hybrid sensor histidine kinase - response regulatorAL479_RS19080Not AvailableNegative3957293 - 395796425503.5
AttlNot AvailableNot AvailablePositive3958008 - 3958022Not Available
Putative bacteriophage integraseAL479_RS19085Not AvailableNegative3958038 - 395932448177.6
excisionase family proteinAL479_RS19090Not AvailableNegative3959324 - 39595398355.04
Hypothetical proteinAL479_RS19095Not AvailableNegative3959604 - 39598439125.05
RectAL479_RS19100Not AvailableNegative3959886 - 396099541065.6
Putatitive bacteriophage exodeoxyribonuclease viiiAL479_RS19105Not AvailableNegative3961007 - 3963691100494.0
dna breaking-rejoining proteinAL479_RS19110Not AvailableNegative3963819 - 396417013616.3
Hypothetical proteinAL479_RS19115Not AvailableNegative3964192 - 39643505944.02
duf1482 family proteinAL479_RS19120Not AvailableNegative3964350 - 39645447011.25

Displaying genes 1 – 10 of 4609 in total

Metabolites

94 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003659(2S,3S)-3-methyl-L-aspartateC5H8NO4Chemical structure of (2S,3S)-3-methyl-L-aspartateNot available
Average146.123Da
Monoisotopic146.0458813Da
BASm00055001-octadecanoyl-sn-glycero-3-phosphateC21H41O7PChemical structure of 1-octadecanoyl-sn-glycero-3-phosphateNot available
Average436.5198Da
Monoisotopic436.2589902Da
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014037Fumaric acidC4H4O4Chemical structure of Fumaric acid110-17-8
Average116.0722Da
Monoisotopic116.010958616Da
BASm0014041Oleic acidC18H34O2Chemical structure of Oleic acid112-80-1
Average282.4614Da
Monoisotopic282.255880332Da
BASm0014058Myristic acidC14H28O2Chemical structure of Myristic acid544-63-8
Average228.3709Da
Monoisotopic228.20893014Da

Displaying 1–10 of 94 metabolites

Health Effects

No health effects information available for this bacterium.