Rhodococcus ruber

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus ruber is a Gram-positive bacterium commonly found in soil environments. This microbe is characterized by its rod-shaped morphology and its ability to thrive in diverse ecological niches, particularly in terrestrial habitats. R. ruber exhibits notable metabolic versatility, which enables it to utilize a wide range of organic compounds as carbon sources, thereby contributing to soil health and nutrient cycling. The organism's adaptation to soil environments may be linked to its capability for biodegradation, allowing it to break down various xenobiotic compounds, including hydrocarbons and other pollutants. This trait not only highlights its potential role in bioremediation but also underscores its significance in maintaining soil quality and ecological balance. R. ruber's presence in soil ecosystems suggests a potential symbiotic relationship with plants and other soil microorganisms, which can enhance nutrient availability and promote plant growth. The bacterium's ability to survive in varying environmental conditions further emphasizes its ecological resilience and importance in soil microbiology. Overall, R. ruber serves as a key player in the intricate web of soil microbial communities, contributing to both ecological stability and environmental sustainability.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus ruber
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatSoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus ruber strain YC-YT1 plasmid unnamed1, complete

Gene Summary

Adenine Count

25721 bp

Thymine Count

26671 bp

Guanine Count

53809 bp

Cytosine Count

53545 bp

Genome Length

159746 bp

Protein-coding Genes

144 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
arsr/smtb family transcription factorYT1_RS00010Not AvailablePositive392 - 104523635.3
dinb family proteinYT1_RS00015Not AvailableNegative1068 - 159820491.4
hypothetical proteinYT1_RS00020Not AvailablePositive2557 - 344730747.2
shoct domain-containing proteinYT1_RS00025Not AvailablePositive3462 - 37259892.98
hypothetical proteinYT1_RS00030Not AvailablePositive3722 - 437222933.3
hypothetical proteinYT1_RS00040Not AvailablePositive4984 - 539414261.6
hypothetical proteinYT1_RS27500Not AvailablePositive5747 - 653527193.0
alpha/beta fold hydrolaseYT1_RS00050Not AvailablePositive7013 - 798434867.1
alpha/beta fold hydrolaseYT1_RS00055Not AvailablePositive8502 - 87719739.54
is21-like element helper atpase istbYT1_RS00060Not AvailableNegative8763 - 960230117.1

Displaying genes 1 – 10 of 144 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.