Flavobacterium johnsoniae str. CI04

Gram-negativeRodNon-motileAerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium johnsoniae strain CI04 is a nonsporulating, rod-shaped, Gram-negative bacterium that thrives in aerobic environments, with an optimal growth temperature of 20.0°C. This species is part of a diverse group of microorganisms that can inhabit multiple ecological niches, indicating a versatile adaptability to varying environmental conditions. The nonsporulating nature of F. johnsoniae CI04 suggests that it relies on vegetative growth rather than spore formation for survival and reproduction, which may influence its ecological strategies in nutrient acquisition and competition with other microorganisms. The ability to grow optimally at a relatively low temperature points to its potential role in cooler habitats, possibly including aquatic systems or soil environments that experience moderate temperatures. Given its aerobic requirement, F. johnsoniae CI04 likely plays a significant role in the cycling of organic matter and nutrients in its habitat, contributing to the overall microbial community dynamics. This bacterium may be involved in the degradation of complex organic compounds, highlighting its ecological importance in biogeochemical processes. Further studies could elucidate its specific interactions within microbial communities and its potential applications in biotechnology, particularly in the context of bioremediation or organic matter decomposition in cooler ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium johnsoniae
StrainCI04

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Flavobacterium johnsoniae str. CI04
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature20
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)catfish, Pangasianodon hypophthalmus, Lates calcarifer
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium johnsoniae strain CI04 NODE_13, whole genome

Gene Summary

Adenine Count

1795794 bp

Thymine Count

1790608 bp

Guanine Count

953729 bp

Cytosine Count

952046 bp

Genome Length

5492177 bp

Protein-coding Genes

4524 genes

Non-Coding Genes

73 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nadh dehydrogenaseBKM63_07135Not AvailableNegative1587597 - 158862838380.9
nadh oxidoreductase (quinone) subunit fBKM63_07140Not AvailableNegative1588711 - 159007850201.0
nad(p)h-dependent oxidoreductase subunit eBKM63_07145Not AvailableNegative1590080 - 159061020244.6
nadh dehydrogenaseBKM63_07150Not AvailableNegative1590810 - 159204847154.5
nadh dehydrogenaseBKM63_07155Not AvailableNegative1592074 - 159259520630.4
nadh dehydrogenaseBKM63_07160Not AvailableNegative1592597 - 159314519916.1
nadh-quinone oxidoreductase subunit aBKM63_07165Not AvailableNegative1593304 - 159366913816.4
cold-shock proteinBKM63_07170Not AvailableNegative1593911 - 15941057098.27
aspartate--trna ligaseBKM63_07175Not AvailableNegative1594411 - 159616266171.0
thioredoxinBKM63_07180Not AvailablePositive1596319 - 159731437587.7

Displaying genes 1421 – 1430 of 4597 in total

Pathways

15 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

64 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001415beta-L-rhamnoseC6H12O5Chemical structure of beta-L-rhamnoseNot available
Average164.1565Da
Monoisotopic164.0684735Da
BASm0001463alpha-L-rhamnoseC6H12O5Chemical structure of alpha-L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.068473494Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002051D-fructoseC6H12O6Chemical structure of D-fructose57-48-7
Average180.1559Da
Monoisotopic180.0633881Da

Displaying 1–10 of 64 metabolites

Health Effects

No health effects information available for this bacterium.