Shigella boydii

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Shigella

Description

Shigella boydii is a Gram-negative, rod-shaped bacterium characterized by its non-motility and the presence of true flagella. This microbe typically exists in pairs or as single cells and is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. As a chemoorganotroph, S. boydii derives energy from organic compounds, with an optimal growth temperature of 37°C, placing it within the mesophilic temperature classification. The organism is associated with host environments, indicating a close relationship with its biological hosts while also exhibiting free-living characteristics. Notably, S. boydii contains two cellular membranes, which is typical for Gram-negative bacteria, and possesses four replicons in its genome, reflecting a complex genetic structure. The genome of S. boydii is accessible through multiple accession numbers, indicating its availability for further scientific exploration. The ecological role of Shigella boydii may involve interactions within host organisms, potentially influencing microbial communities and contributing to nutrient cycling in host-associated habitats. Its adaptation to both free-living and host-associated lifestyles suggests a versatile ecological strategy, which may play a significant role in its survival and proliferation in variable environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusShigella
SpeciesShigella boydii
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Shigella boydii
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Metazoa
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Shigella boydii strain NCTC8576 genome assembly, contig:

Gene Summary

Adenine Count

1225489 bp

Thymine Count

1222375 bp

Guanine Count

1264693 bp

Cytosine Count

1292857 bp

Genome Length

5005414 bp

Protein-coding Genes

4707 genes

Non-Coding Genes

659 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna polymerase iii subunit deltaC5K23_03225Not AvailablePositive514895 - 51592638792.2
nicotinate-nicotinamide nucleotide adenylyltransferaseC5K23_03230Not AvailablePositive515928 - 51656924546.3
ribosome silencing factor rsfsC5K23_03240Not AvailablePositive517463 - 51778011582.9
23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmhC5K23_03245Not AvailablePositive517784 - 51825117342.1
penicillin-binding protein 2C5K23_03250Not AvailablePositive518282 - 52018370842.5
rod shape-determining protein rodaC5K23_03255Not AvailablePositive520186 - 52129840478.6
endolytic peptidoglycan transglycosylase rlpaC5K23_03260Not AvailablePositive521309 - 52239737502.0
serine-type d-ala-d-ala carboxypeptidaseC5K23_03265Not AvailablePositive522537 - 52374844538.6
hypothetical proteinC5K23_03270Not AvailablePositive523859 - 5241229827.92
octanoyltransferaseC5K23_03275Not AvailablePositive524223 - 52486423884.0

Displaying genes 6271 – 6280 of 20834 in total

Pathways

1 pathway

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
ShigellosisCausesPMC5177732

Displaying health effects 1 – 1 of 1 in total