Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | CF8_ST22 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1312762 bp
Thymine Count
1316688 bp
Guanine Count
1402969 bp
Cytosine Count
1407022 bp
Genome Length
5439441 bp
Protein-coding Genes
4889 genes
Non-Coding Genes
266 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| escc/yscc/hrcc family type iii secretion system outer membrane ring protein | BED45_10440 | Not Available | Negative | 133270 - 135018 | 64772.8 |
| hypothetical protein | BED45_10445 | Not Available | Negative | 135002 - 135235 | 9075.0 |
| hypothetical protein | BED45_10450 | Not Available | Negative | 135222 - 136004 | 30204.3 |
| hypothetical protein | BED45_10455 | Not Available | Negative | 136020 - 136388 | 13538.2 |
| type iii secretion apparatus | BED45_10460 | Not Available | Positive | 136599 - 137897 | 48698.8 |
| escf/yscf/hrpa family type iii secretion system needle major subunit | BED45_10465 | Not Available | Positive | 137924 - 138211 | 10451.1 |
| type iii secretion system protein prgj | BED45_10470 | Not Available | Positive | 138357 - 138602 | 8822.43 |
| escj/yscj/hrcj family type iii secretion inner membrane ring protein | BED45_10475 | Not Available | Positive | 138599 - 139330 | 27062.9 |
| hypothetical protein | BED45_10480 | Not Available | Positive | 139390 - 139926 | 20933.7 |
| type iii secretion protein hrpe | BED45_10485 | Not Available | Positive | 139919 - 140578 | 24776.4 |
Pathways
1235 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

