Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | CF8_ST22 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1312762 bp
Thymine Count
1316688 bp
Guanine Count
1402969 bp
Cytosine Count
1407022 bp
Genome Length
5439441 bp
Protein-coding Genes
4889 genes
Non-Coding Genes
266 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BED45_10345 | Not Available | Positive | 116765 - 117004 | 8370.48 |
| dna-binding transcriptional regulator kdgr | BED45_10350 | Not Available | Negative | 117119 - 117910 | 30105.2 |
| multidrug mfs transporter | BED45_10355 | Not Available | Positive | 118085 - 119452 | 48009.4 |
| hypothetical protein | BED45_10360 | Not Available | Negative | 119516 - 119722 | 7480.56 |
| pathogenicity island 1 effector protein | BED45_10365 | Not Available | Negative | 119732 - 121297 | 57120.6 |
| helix-turn-helix transcriptional regulator | BED45_10370 | Not Available | Negative | 121478 - 122158 | 25551.0 |
| transglycosylase slt domain protein | BED45_10375 | Not Available | Negative | 122297 - 122947 | 24551.3 |
| escu/yscu/hrcu family type iii secretion system export apparatus switch protein | BED45_10380 | Not Available | Negative | 122937 - 124073 | 42947.6 |
| esct/ysct/hrct family type iii secretion system export apparatus protein | BED45_10385 | Not Available | Negative | 124079 - 124840 | 27673.3 |
| escs/yscs/hrcs family type iii secretion system export apparatus protein | BED45_10390 | Not Available | Negative | 124851 - 125111 | 9311.9 |
Pathways
1235 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

