Citrobacter freundii str. c196

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter freundii strain c196 is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic metabolism. This strain is nonsporulating and has been identified in a variety of environments, including hospital sewage, the intestinal tract, general sewage, soil, and surface waters. Its presence in diverse habitats suggests a versatile ecological role, allowing it to adapt to both anaerobic and aerobic conditions. The ability to thrive in hospital sewage indicates a potential association with human activity, while its isolation from natural environments such as soil and surface waters highlights its adaptability and resilience. The varied habitats of C. freundii str. c196 may reflect its role in nutrient cycling and organic matter decomposition within these ecosystems. Its adaptable nature may enable it to respond to environmental changes, potentially influencing microbial community dynamics in both clinical and natural settings. This strain's capacity to inhabit both anthropogenic and natural environments underscores its significance in understanding microbial ecology and the impacts of human waste on microbial populations in the environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter freundii
Strainc196

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter freundii str. c196
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitathospital sewage; intestinal tract; sewage; soil; surface waters
Biotic relationshipNot Available
Host(s)Homo sapiens, Metazoa, Oryctolagus cuniculus
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter freundii strain c196 Scaffold172, whole genome shotgun

Gene Summary

Adenine Count

1416802 bp

Thymine Count

1409964 bp

Guanine Count

1501215 bp

Cytosine Count

1514219 bp

Genome Length

5842230 bp

Protein-coding Genes

5411 genes

Non-Coding Genes

392 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Gp22B9P90_20970Not AvailablePositive4112683 - 411299711046.1
Gp23B9P90_20975Not AvailablePositive4112998 - 411367222800.7
Dna invertase, resolvase, site-specific recombinase pinB9P90_23915Not AvailableNegative4721193 - 472175320974.1
toxinB9P90_23920Not AvailablePositive4721973 - 47221376347.61
Dna invertase, resolvase, site-specific recombinase pinB9P90_23925Not AvailableNegative4722759 - 472330420188.2
Tail proteinB9P90_23930Not AvailablePositive4723355 - 472372012902.4
Tail fiber assembly proteinB9P90_23935Not AvailablePositive4723723 - 472415716115.9
Putative tail assembly chaperoneB9P90_23940Not AvailableNegative4724129 - 472455415823.7
Tail proteinB9P90_23945Not AvailableNegative4724557 - 472517621511.6
Tail fiber proteinB9P90_24490Not AvailableNegative4840313 - 484074714859.5

Displaying genes 301 – 310 of 5803 in total

Pathways

22 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Infections in animalsCausesPMC6885840
Infections of the urinary and respiratory tracts in humansCausesPMC6885840
Respiratory tract and wound infections in horsesCausesPMC6885840
Respiratory tract infections in dogsCausesPMC6885840
Pleuritis and urinary tract infections in catsCausesPMC6885840
Bacterial infectionsCausesPMC7578172
Opportunistic infectionsCausesPMC12838003

Displaying health effects 1 – 7 of 7 in total