BacMap pathways

Pathways for Phenylobacterium parvum strain HYN0004

Search and browse metabolic pathways associated with this bacterium.

1536 pathways

Displaying pathways 126–150 of 1536

ThumbnailPathwayIdentifiersDescription
3?,7?,12?,23?,27?-pentahydroxy-Lithocholate secondary bile acid biosynthesis (hdh operon) thumbnail
3?,7?,12?,23?,27?-pentahydroxy-Lithocholate secondary bile acid biosynthesis (hdh operon)
SMPDBPBK0650428
PathWhizPW688207
The biosynthesis of ursocholic acid, a secondary bile acid, is closely associated with the enzymatic activities encoded by the hdh operon in Clostridium absonum. This operon includes two contiguous genes: hdhA, encoding the 7?-hydroxysteroid dehydrogenase (7?-HSDH), and hdhB, coding for the 7?-hydroxysteroid dehydrogenase (7?-HSDH). The process begins with the enzyme 7?-HSDH, which catalyzes the oxidation of cholic acid (CA) at the 7?-hydroxy position, converting it into a 7-keto intermediate. Subsequently, the 7?-HSDH reduces this keto intermediate, but in a stereoselective manner that introduces a 7?-hydroxy group, resulting in the formation of ursocholic acid. The operon appears to be co-regulated, facilitating a coordinated response to bile acids, with promoter and regulatory sequences identified upstream of hdhA and hdhB. The biosynthetic pathway mediated by this operon exemplifies a stereospecific transformation that alters the aromatic configuration of bile acids, enabling bacteria like C. absonum to produce functionally diverse secondary bile acids such as ursocholic acid, which play pivotal roles in host-microbiome interactions and possess potential therapeutic properties.
3?,7?,12?-Trihydroxy-5?-cholanoic acid secondary bile acid biosynthesis (hdh operon) thumbnail
3?,7?,12?-Trihydroxy-5?-cholanoic acid secondary bile acid biosynthesis (hdh operon)
SMPDBPBK0650431
PathWhizPW688210
The biosynthesis of ursocholic acid, a secondary bile acid, is closely associated with the enzymatic activities encoded by the hdh operon in Clostridium absonum. This operon includes two contiguous genes: hdhA, encoding the 7?-hydroxysteroid dehydrogenase (7?-HSDH), and hdhB, coding for the 7?-hydroxysteroid dehydrogenase (7?-HSDH). The process begins with the enzyme 7?-HSDH, which catalyzes the oxidation of cholic acid (CA) at the 7?-hydroxy position, converting it into a 7-keto intermediate. Subsequently, the 7?-HSDH reduces this keto intermediate, but in a stereoselective manner that introduces a 7?-hydroxy group, resulting in the formation of ursocholic acid. The operon appears to be co-regulated, facilitating a coordinated response to bile acids, with promoter and regulatory sequences identified upstream of hdhA and hdhB. The biosynthetic pathway mediated by this operon exemplifies a stereospecific transformation that alters the aromatic configuration of bile acids, enabling bacteria like C. absonum to produce functionally diverse secondary bile acids such as ursocholic acid, which play pivotal roles in host-microbiome interactions and possess potential therapeutic properties.
3?,7?,9?,13?,23?,28?-hexahydroxy-Lithocholate secondary bile acid biosynthesis (hdh operon) thumbnail
3?,7?,9?,13?,23?,28?-hexahydroxy-Lithocholate secondary bile acid biosynthesis (hdh operon)
SMPDBPBK0650429
PathWhizPW688208
The biosynthesis of ursocholic acid, a secondary bile acid, is closely associated with the enzymatic activities encoded by the hdh operon in Clostridium absonum. This operon includes two contiguous genes: hdhA, encoding the 7?-hydroxysteroid dehydrogenase (7?-HSDH), and hdhB, coding for the 7?-hydroxysteroid dehydrogenase (7?-HSDH). The process begins with the enzyme 7?-HSDH, which catalyzes the oxidation of cholic acid (CA) at the 7?-hydroxy position, converting it into a 7-keto intermediate. Subsequently, the 7?-HSDH reduces this keto intermediate, but in a stereoselective manner that introduces a 7?-hydroxy group, resulting in the formation of ursocholic acid. The operon appears to be co-regulated, facilitating a coordinated response to bile acids, with promoter and regulatory sequences identified upstream of hdhA and hdhB. The biosynthetic pathway mediated by this operon exemplifies a stereospecific transformation that alters the aromatic configuration of bile acids, enabling bacteria like C. absonum to produce functionally diverse secondary bile acids such as ursocholic acid, which play pivotal roles in host-microbiome interactions and possess potential therapeutic properties.
3?,7?,9?,13?,24?,28?-hexahydroxy-Lithocholate secondary bile acid biosynthesis (hdh operon) thumbnail
3?,7?,9?,13?,24?,28?-hexahydroxy-Lithocholate secondary bile acid biosynthesis (hdh operon)
SMPDBPBK0650430
PathWhizPW688209
The biosynthesis of ursocholic acid, a secondary bile acid, is closely associated with the enzymatic activities encoded by the hdh operon in Clostridium absonum. This operon includes two contiguous genes: hdhA, encoding the 7?-hydroxysteroid dehydrogenase (7?-HSDH), and hdhB, coding for the 7?-hydroxysteroid dehydrogenase (7?-HSDH). The process begins with the enzyme 7?-HSDH, which catalyzes the oxidation of cholic acid (CA) at the 7?-hydroxy position, converting it into a 7-keto intermediate. Subsequently, the 7?-HSDH reduces this keto intermediate, but in a stereoselective manner that introduces a 7?-hydroxy group, resulting in the formation of ursocholic acid. The operon appears to be co-regulated, facilitating a coordinated response to bile acids, with promoter and regulatory sequences identified upstream of hdhA and hdhB. The biosynthetic pathway mediated by this operon exemplifies a stereospecific transformation that alters the aromatic configuration of bile acids, enabling bacteria like C. absonum to produce functionally diverse secondary bile acids such as ursocholic acid, which play pivotal roles in host-microbiome interactions and possess potential therapeutic properties.
3?,7?-dihydroxy-12-oxo-5?-cholanate secondary bile acid biosynthesis (hdh operon) thumbnail
3?,7?-dihydroxy-12-oxo-5?-cholanate secondary bile acid biosynthesis (hdh operon)
SMPDBPBK0650331
PathWhizPW688110
The biosynthesis of ursocholic acid, a secondary bile acid, is closely associated with the enzymatic activities encoded by the hdh operon in Clostridium absonum. This operon includes two contiguous genes: hdhA, encoding the 7?-hydroxysteroid dehydrogenase (7?-HSDH), and hdhB, coding for the 7?-hydroxysteroid dehydrogenase (7?-HSDH). The process begins with the enzyme 7?-HSDH, which catalyzes the oxidation of cholic acid (CA) at the 7?-hydroxy position, converting it into a 7-keto intermediate. Subsequently, the 7?-HSDH reduces this keto intermediate, but in a stereoselective manner that introduces a 7?-hydroxy group, resulting in the formation of ursocholic acid. The operon appears to be co-regulated, facilitating a coordinated response to bile acids, with promoter and regulatory sequences identified upstream of hdhA and hdhB. The biosynthetic pathway mediated by this operon exemplifies a stereospecific transformation that alters the aromatic configuration of bile acids, enabling bacteria like C. absonum to produce functionally diverse secondary bile acids such as ursocholic acid, which play pivotal roles in host-microbiome interactions and possess potential therapeutic properties.
4-Chlorobiphenyl degradation thumbnail
4-Chlorobiphenyl degradation
SMPDBSMP0249597
PathWhizPW251361
No description available
4-Hydroxyphthalate degradation thumbnail
4-Hydroxyphthalate degradation
SMPDBPBK0245090
PathWhizPW246846
Bacteria such as Comamonas testosteroni plays a crucial role in degradation of 4-hydroxyphthalate, an environmental pollutant. 4-hydroxyphthalate is degraded by Comamonas testosterone, yielding precursors used in the benzoate degradation pathway to yield carbon and energy, which is vital for the bacteria's growth and survival. Although the precise mechanisms of 4-hydroxyphthalate uptake, potentially facilitated by MFS transporters, are not fully understood, the subsequent enzymatic breakdown within the cell yields 4-Carboxy-2-hydroxymuconate semialdehyde, an essential intermediate for the benzoate degradation pathway.
5-phosphoribosyl 1-pyrophosphate thumbnail
5-phosphoribosyl 1-pyrophosphate
SMPDBSMP0576655
PathWhizPW611361
No description available
7?-hydroxy-3,12-dioxo-5?-cholan-24-oate secondary bile acid biosynthesis (hdh operon) thumbnail
7?-hydroxy-3,12-dioxo-5?-cholan-24-oate secondary bile acid biosynthesis (hdh operon)
SMPDBPBK0650332
PathWhizPW688111
The biosynthesis of ursocholic acid, a secondary bile acid, is closely associated with the enzymatic activities encoded by the hdh operon in Clostridium absonum. This operon includes two contiguous genes: hdhA, encoding the 7?-hydroxysteroid dehydrogenase (7?-HSDH), and hdhB, coding for the 7?-hydroxysteroid dehydrogenase (7?-HSDH). The process begins with the enzyme 7?-HSDH, which catalyzes the oxidation of cholic acid (CA) at the 7?-hydroxy position, converting it into a 7-keto intermediate. Subsequently, the 7?-HSDH reduces this keto intermediate, but in a stereoselective manner that introduces a 7?-hydroxy group, resulting in the formation of ursocholic acid. The operon appears to be co-regulated, facilitating a coordinated response to bile acids, with promoter and regulatory sequences identified upstream of hdhA and hdhB. The biosynthetic pathway mediated by this operon exemplifies a stereospecific transformation that alters the aromatic configuration of bile acids, enabling bacteria like C. absonum to produce functionally diverse secondary bile acids such as ursocholic acid, which play pivotal roles in host-microbiome interactions and possess potential therapeutic properties.
?-Muricholate secondary bile acid biosynthesis (hdh operon) thumbnail
?-Muricholate secondary bile acid biosynthesis (hdh operon)
SMPDBPBK0650441
PathWhizPW688220
The biosynthesis of ursocholic acid, a secondary bile acid, is closely associated with the enzymatic activities encoded by the hdh operon in Clostridium absonum. This operon includes two contiguous genes: hdhA, encoding the 7?-hydroxysteroid dehydrogenase (7?-HSDH), and hdhB, coding for the 7?-hydroxysteroid dehydrogenase (7?-HSDH). The process begins with the enzyme 7?-HSDH, which catalyzes the oxidation of cholic acid (CA) at the 7?-hydroxy position, converting it into a 7-keto intermediate. Subsequently, the 7?-HSDH reduces this keto intermediate, but in a stereoselective manner that introduces a 7?-hydroxy group, resulting in the formation of ursocholic acid. The operon appears to be co-regulated, facilitating a coordinated response to bile acids, with promoter and regulatory sequences identified upstream of hdhA and hdhB. The biosynthetic pathway mediated by this operon exemplifies a stereospecific transformation that alters the aromatic configuration of bile acids, enabling bacteria like C. absonum to produce functionally diverse secondary bile acids such as ursocholic acid, which play pivotal roles in host-microbiome interactions and possess potential therapeutic properties.
Adenine and Adenosine Salvage III thumbnail
Adenine and Adenosine Salvage III
SMPDBSMP0002084
PathWhizPW002072
No description available
Adenine ribonucleotide biosynthesis thumbnail
Adenine ribonucleotide biosynthesis
SMPDBSMP0389439
PathWhizPW398412
No description available
Adenosine Nucleotides Degradation  thumbnail
Adenosine Nucleotides Degradation
SMPDBSMP0002103
PathWhizPW002091
No description available
Adenosylcobalamin Salvage from Cobinamide thumbnail
Adenosylcobalamin Salvage from Cobinamide
SMPDBSMP0001898
PathWhizPW001884
No description available
ADP-L-glycero-beta-D-manno-heptose Biosynthesis thumbnail
ADP-L-glycero-beta-D-manno-heptose Biosynthesis
SMPDBSMP0002107
PathWhizPW002095
No description available
Aerobactin biosynthesis thumbnail
Aerobactin biosynthesis
SMPDBSMP0675766
PathWhizPW713545
No description available
Allantoin Degradation (Anaerobic) thumbnail
Allantoin Degradation (Anaerobic)
SMPDBSMP0002064
PathWhizPW002050
No description available
Amino Sugar and Nucleotide Sugar Metabolism I thumbnail
Amino Sugar and Nucleotide Sugar Metabolism I
SMPDBSMP0000905
PathWhizPW000886
No description available
Amino Sugar and Nucleotide Sugar Metabolism II thumbnail
Amino Sugar and Nucleotide Sugar Metabolism II
SMPDBSMP0000906
PathWhizPW000887
No description available
Amino Sugar and Nucleotide Sugar Metabolism III thumbnail
Amino Sugar and Nucleotide Sugar Metabolism III
SMPDBSMP0000914
PathWhizPW000895
No description available
Aminoacyl-tRNA biosynthesis thumbnail
Aminoacyl-tRNA biosynthesis
SMPDBSMP0398229
PathWhizPW409026
No description available
Aminopropylcadaverine Biosynthesis thumbnail
Aminopropylcadaverine Biosynthesis
SMPDBSMP0002053
PathWhizPW002039
No description available
Ara operon Inactivation (Positive regulation of araBAD) thumbnail
Ara operon Inactivation (Positive regulation of araBAD)
SMPDBSMP0664924
PathWhizPW702703
No description available
Arginine catabolism: arcD, arcA, arcB, arcC thumbnail
Arginine catabolism: arcD, arcA, arcB, arcC
SMPDBSMP0565267
PathWhizPW598262
No description available
Arginine Metabolism thumbnail
Arginine Metabolism
SMPDBSMP0000812
PathWhizPW000790
No description available

Displaying pathways 126–150 of 1536