BacMap pathways

Pathways for Phenylobacterium parvum strain HYN0004

Search and browse metabolic pathways associated with this bacterium.

1536 pathways

Displaying pathways 1–25 of 1536

ThumbnailPathwayIdentifiersDescription
(3?,5?,7?,23R)-3,7,23-Trihydroxycholanic acid secondary bile acid biosynthesis (hdh operon) thumbnail
(3?,5?,7?,23R)-3,7,23-Trihydroxycholanic acid secondary bile acid biosynthesis (hdh operon)
SMPDBPBK0650437
PathWhizPW688216
The biosynthesis of ursocholic acid, a secondary bile acid, is closely associated with the enzymatic activities encoded by the hdh operon in Clostridium absonum. This operon includes two contiguous genes: hdhA, encoding the 7?-hydroxysteroid dehydrogenase (7?-HSDH), and hdhB, coding for the 7?-hydroxysteroid dehydrogenase (7?-HSDH). The process begins with the enzyme 7?-HSDH, which catalyzes the oxidation of cholic acid (CA) at the 7?-hydroxy position, converting it into a 7-keto intermediate. Subsequently, the 7?-HSDH reduces this keto intermediate, but in a stereoselective manner that introduces a 7?-hydroxy group, resulting in the formation of ursocholic acid. The operon appears to be co-regulated, facilitating a coordinated response to bile acids, with promoter and regulatory sequences identified upstream of hdhA and hdhB. The biosynthetic pathway mediated by this operon exemplifies a stereospecific transformation that alters the aromatic configuration of bile acids, enabling bacteria like C. absonum to produce functionally diverse secondary bile acids such as ursocholic acid, which play pivotal roles in host-microbiome interactions and possess potential therapeutic properties.
1,6-Anhydro-N-acetylmuramic Acid Recycling thumbnail
1,6-Anhydro-N-acetylmuramic Acid Recycling
SMPDBSMP0002076
PathWhizPW002064
No description available
1-Acyl-sn-glycero-3-phosphoethanolamine (N-C12:0)  metabolism thumbnail
1-Acyl-sn-glycero-3-phosphoethanolamine (N-C12:0) metabolism
SMPDBSMP0652505
PathWhizPW690284
No description available
1-Acyl-sn-glycero-3-phosphoethanolamine (N-C14:0) metabolism thumbnail
1-Acyl-sn-glycero-3-phosphoethanolamine (N-C14:0) metabolism
SMPDBSMP0653278
PathWhizPW691057
No description available
1-Acyl-sn-glycero-3-phosphoethanolamine (N-C16:0) metabolism thumbnail
1-Acyl-sn-glycero-3-phosphoethanolamine (N-C16:0) metabolism
SMPDBSMP0653487
PathWhizPW691266
No description available
1-Acyl-sn-glycero-3-phosphoethanolamine (N-C18:0) metabolism thumbnail
1-Acyl-sn-glycero-3-phosphoethanolamine (N-C18:0) metabolism
SMPDBSMP0653491
PathWhizPW691270
No description available
1-Acyl-sn-glycero-3-phosphoglycerol (N-C12:0) metabolism thumbnail
1-Acyl-sn-glycero-3-phosphoglycerol (N-C12:0) metabolism
SMPDBSMP0653493
PathWhizPW691272
No description available
1-Acyl-sn-glycero-3-phosphoglycerol (N-C14:0) metabolism thumbnail
1-Acyl-sn-glycero-3-phosphoglycerol (N-C14:0) metabolism
SMPDBSMP0653495
PathWhizPW691274
No description available
1-Acyl-sn-glycero-3-phosphoglycerol (N-C14:1) metabolism thumbnail
1-Acyl-sn-glycero-3-phosphoglycerol (N-C14:1) metabolism
SMPDBSMP0653498
PathWhizPW691277
No description available
1-Acyl-sn-glycero-3-phosphoglycerol (N-C16:0) metabolism thumbnail
1-Acyl-sn-glycero-3-phosphoglycerol (N-C16:0) metabolism
SMPDBSMP0653502
PathWhizPW691281
No description available
1-Acyl-sn-glycero-3-phosphoglycerol (N-C16:1) metabolism thumbnail
1-Acyl-sn-glycero-3-phosphoglycerol (N-C16:1) metabolism
SMPDBSMP0653504
PathWhizPW691283
No description available
1-Acyl-sn-glycero-3-phosphoglycerol (N-C18:0) metabolism thumbnail
1-Acyl-sn-glycero-3-phosphoglycerol (N-C18:0) metabolism
SMPDBSMP0653507
PathWhizPW691286
No description available
1-Acyl-sn-glycero-3-phosphoglycerol (N-C18:1) metabolism thumbnail
1-Acyl-sn-glycero-3-phosphoglycerol (N-C18:1) metabolism
SMPDBSMP0653510
PathWhizPW691289
No description available
1?,3?,7?,18?,23?,29?-hexahydroxy-Isolithocholate secondary bile acid biosynthesis (hdh operon) thumbnail
1?,3?,7?,18?,23?,29?-hexahydroxy-Isolithocholate secondary bile acid biosynthesis (hdh operon)
SMPDBPBK0650333
PathWhizPW688112
The biosynthesis of ursocholic acid, a secondary bile acid, is closely associated with the enzymatic activities encoded by the hdh operon in Clostridium absonum. This operon includes two contiguous genes: hdhA, encoding the 7?-hydroxysteroid dehydrogenase (7?-HSDH), and hdhB, coding for the 7?-hydroxysteroid dehydrogenase (7?-HSDH). The process begins with the enzyme 7?-HSDH, which catalyzes the oxidation of cholic acid (CA) at the 7?-hydroxy position, converting it into a 7-keto intermediate. Subsequently, the 7?-HSDH reduces this keto intermediate, but in a stereoselective manner that introduces a 7?-hydroxy group, resulting in the formation of ursocholic acid. The operon appears to be co-regulated, facilitating a coordinated response to bile acids, with promoter and regulatory sequences identified upstream of hdhA and hdhB. The biosynthetic pathway mediated by this operon exemplifies a stereospecific transformation that alters the aromatic configuration of bile acids, enabling bacteria like C. absonum to produce functionally diverse secondary bile acids such as ursocholic acid, which play pivotal roles in host-microbiome interactions and possess potential therapeutic properties.
1?,3?,7?,18?,23?,29?-hexahydroxy-Lithocholate secondary bile acid biosynthesis (hdh operon) thumbnail
1?,3?,7?,18?,23?,29?-hexahydroxy-Lithocholate secondary bile acid biosynthesis (hdh operon)
SMPDBPBK0650334
PathWhizPW688113
The biosynthesis of ursocholic acid, a secondary bile acid, is closely associated with the enzymatic activities encoded by the hdh operon in Clostridium absonum. This operon includes two contiguous genes: hdhA, encoding the 7?-hydroxysteroid dehydrogenase (7?-HSDH), and hdhB, coding for the 7?-hydroxysteroid dehydrogenase (7?-HSDH). The process begins with the enzyme 7?-HSDH, which catalyzes the oxidation of cholic acid (CA) at the 7?-hydroxy position, converting it into a 7-keto intermediate. Subsequently, the 7?-HSDH reduces this keto intermediate, but in a stereoselective manner that introduces a 7?-hydroxy group, resulting in the formation of ursocholic acid. The operon appears to be co-regulated, facilitating a coordinated response to bile acids, with promoter and regulatory sequences identified upstream of hdhA and hdhB. The biosynthetic pathway mediated by this operon exemplifies a stereospecific transformation that alters the aromatic configuration of bile acids, enabling bacteria like C. absonum to produce functionally diverse secondary bile acids such as ursocholic acid, which play pivotal roles in host-microbiome interactions and possess potential therapeutic properties.
1?,3?,7?-Trihydroxy-5?-cholanic acid secondary bile acid biosynthesis (hdh operon) thumbnail
1?,3?,7?-Trihydroxy-5?-cholanic acid secondary bile acid biosynthesis (hdh operon)
SMPDBPBK0650434
PathWhizPW688213
The biosynthesis of ursocholic acid, a secondary bile acid, is closely associated with the enzymatic activities encoded by the hdh operon in Clostridium absonum. This operon includes two contiguous genes: hdhA, encoding the 7?-hydroxysteroid dehydrogenase (7?-HSDH), and hdhB, coding for the 7?-hydroxysteroid dehydrogenase (7?-HSDH). The process begins with the enzyme 7?-HSDH, which catalyzes the oxidation of cholic acid (CA) at the 7?-hydroxy position, converting it into a 7-keto intermediate. Subsequently, the 7?-HSDH reduces this keto intermediate, but in a stereoselective manner that introduces a 7?-hydroxy group, resulting in the formation of ursocholic acid. The operon appears to be co-regulated, facilitating a coordinated response to bile acids, with promoter and regulatory sequences identified upstream of hdhA and hdhB. The biosynthetic pathway mediated by this operon exemplifies a stereospecific transformation that alters the aromatic configuration of bile acids, enabling bacteria like C. absonum to produce functionally diverse secondary bile acids such as ursocholic acid, which play pivotal roles in host-microbiome interactions and possess potential therapeutic properties.
2,3-Dihydroxybenzoate Biosynthesis thumbnail
2,3-Dihydroxybenzoate Biosynthesis
SMPDBSMP0000774
PathWhizPW000751
No description available
2-Acyl-sn-glycero-3-phosphoethanolamine (N-C12:0) metabolism thumbnail
2-Acyl-sn-glycero-3-phosphoethanolamine (N-C12:0) metabolism
SMPDBSMP0653513
PathWhizPW691292
No description available
2-Acyl-sn-glycero-3-phosphoethanolamine (N-C14:0) metabolism thumbnail
2-Acyl-sn-glycero-3-phosphoethanolamine (N-C14:0) metabolism
SMPDBSMP0653515
PathWhizPW691294
No description available
2-Acyl-sn-glycero-3-phosphoethanolamine (N-C16:0) metabolism thumbnail
2-Acyl-sn-glycero-3-phosphoethanolamine (N-C16:0) metabolism
SMPDBSMP0653518
PathWhizPW691297
No description available
2-Acyl-sn-glycero-3-phosphoethanolamine (N-C18:0) metabolism thumbnail
2-Acyl-sn-glycero-3-phosphoethanolamine (N-C18:0) metabolism
SMPDBSMP0653520
PathWhizPW691299
No description available
2-Acyl-sn-glycero-3-phosphoglycerol (n-C12:0) metabolism thumbnail
2-Acyl-sn-glycero-3-phosphoglycerol (n-C12:0) metabolism
SMPDBSMP0653530
PathWhizPW691309
No description available
2-Acyl-sn-glycero-3-phosphoglycerol (N-C14:0) metabolism thumbnail
2-Acyl-sn-glycero-3-phosphoglycerol (N-C14:0) metabolism
SMPDBSMP0653532
PathWhizPW691311
No description available
2-Acyl-sn-glycero-3-phosphoglycerol (N-C14:1) metabolism thumbnail
2-Acyl-sn-glycero-3-phosphoglycerol (N-C14:1) metabolism
SMPDBSMP0653534
PathWhizPW691313
No description available
2-Acyl-sn-glycero-3-phosphoglycerol (N-C16:0) metabolism thumbnail
2-Acyl-sn-glycero-3-phosphoglycerol (N-C16:0) metabolism
SMPDBSMP0653536
PathWhizPW691315
No description available

Displaying pathways 1–25 of 1536