BacMap pathways

Pathways for Stigmatella aurantiaca DW4/3-1 gsam_325

Search and browse metabolic pathways associated with this bacterium.

1443 pathways

Displaying pathways 1426–1443 of 1443

ThumbnailPathwayIdentifiersDescription
Secondary Metabolites: Threonine Biosynthesis from Aspartate thumbnail
Secondary Metabolites: Threonine Biosynthesis from Aspartate
SMPDBSMP0000992
PathWhizPW000976
No description available
Sedoheptulose Bisphosphate Bypass thumbnail
Sedoheptulose Bisphosphate Bypass
SMPDBSMP0002110
PathWhizPW002098
No description available
Serine Biosynthesis and Metabolism thumbnail
Serine Biosynthesis and Metabolism
SMPDBSMP0000829
PathWhizPW000809
No description available
Spermidine Biosynthesis and Metabolism  thumbnail
Spermidine Biosynthesis and Metabolism
SMPDBSMP0002097
PathWhizPW002085
No description available
Spermidine Biosynthesis I thumbnail
Spermidine Biosynthesis I
SMPDBSMP0002054
PathWhizPW002040
No description available
TCA cycle - E coli thumbnail
TCA cycle - E coli
SMPDBSMP0011994
PathWhizPW012852
No description available
TCA cycle - Escherichia coli thumbnail
TCA cycle - Escherichia coli
SMPDBSMP0011997
PathWhizPW012855
No description available
Thioredoxin Pathway thumbnail
Thioredoxin Pathway
SMPDBSMP0002094
PathWhizPW002082
No description available
Threonine Biosynthesis thumbnail
Threonine Biosynthesis
SMPDBSMP0000837
PathWhizPW000817
No description available
Toluene degradation thumbnail
Toluene degradation
SMPDBPBK0246278
PathWhizPW248038
Toluene degradation allows bacteria to use toluene, a common environmental pollutant, as both a carbon and energy source. Toluene enters the bacterial cell by passive diffusion due to its hydrophobic nature. Once within the cell, toluene undergoes a variety of enzymatic reactions. The first step is for the Gamma-Subunit of benzylsuccinate synthase to convert it into benzylsuccinate. This intermediate is then converted to Benzylsuccinyl-CoA by subunit of Benzylsuccinate CoA-transferases. Subsequently, Benzylsuccinyl-CoA undergoes a series of enzymatic reactions to form Benzoylsuccinyl-CoA, and finally benzoyl-CoA, which enters the benzoate degradation pathway, providing the bacteria with energy and carbon for growth and survival.
Trehalose Biosynthesis I thumbnail
Trehalose Biosynthesis I
SMPDBSMP0002100
PathWhizPW002088
No description available
tRNA Charging thumbnail
tRNA Charging
SMPDBSMP0000820
PathWhizPW000799
No description available
Tryptophan Biosynthesis thumbnail
Tryptophan Biosynthesis
SMPDBSMP0387559
PathWhizPW396378
No description available
Ursocholic Acid  biosynthesis (hdh operon) thumbnail
Ursocholic Acid biosynthesis (hdh operon)
SMPDBPBK0650082
PathWhizPW687953
The biosynthesis of ursocholic acid, a secondary bile acid, is closely associated with the enzymatic activities encoded by the hdh operon in Clostridium absonum. This operon includes two contiguous genes: hdhA, encoding the 7?-hydroxysteroid dehydrogenase (7?-HSDH), and hdhB, coding for the 7?-hydroxysteroid dehydrogenase (7?-HSDH). The process begins with the enzyme 7?-HSDH, which catalyzes the oxidation of cholic acid (CA) at the 7?-hydroxy position, converting it into a 7-keto intermediate. Subsequently, the 7?-HSDH reduces this keto intermediate, but in a stereoselective manner that introduces a 7?-hydroxy group, resulting in the formation of ursocholic acid. The operon appears to be co-regulated, facilitating a coordinated response to bile acids, with promoter and regulatory sequences identified upstream of hdhA and hdhB. The biosynthetic pathway mediated by this operon exemplifies a stereospecific transformation that alters the aromatic configuration of bile acids, enabling bacteria like C. absonum to produce functionally diverse secondary bile acids such as ursocholic acid, which play pivotal roles in host-microbiome interactions and possess potential therapeutic properties.
ursodeoxycholic acid secondary bile acid biosynthesis (hdh operon) thumbnail
ursodeoxycholic acid secondary bile acid biosynthesis (hdh operon)
SMPDBPBK0650330
PathWhizPW688109
The biosynthesis of ursocholic acid, a secondary bile acid, is closely associated with the enzymatic activities encoded by the hdh operon in Clostridium absonum. This operon includes two contiguous genes: hdhA, encoding the 7?-hydroxysteroid dehydrogenase (7?-HSDH), and hdhB, coding for the 7?-hydroxysteroid dehydrogenase (7?-HSDH). The process begins with the enzyme 7?-HSDH, which catalyzes the oxidation of cholic acid (CA) at the 7?-hydroxy position, converting it into a 7-keto intermediate. Subsequently, the 7?-HSDH reduces this keto intermediate, but in a stereoselective manner that introduces a 7?-hydroxy group, resulting in the formation of ursocholic acid. The operon appears to be co-regulated, facilitating a coordinated response to bile acids, with promoter and regulatory sequences identified upstream of hdhA and hdhB. The biosynthetic pathway mediated by this operon exemplifies a stereospecific transformation that alters the aromatic configuration of bile acids, enabling bacteria like C. absonum to produce functionally diverse secondary bile acids such as ursocholic acid, which play pivotal roles in host-microbiome interactions and possess potential therapeutic properties.
Vitamin B1/Thiamine Biosynthesis thumbnail
Vitamin B1/Thiamine Biosynthesis
SMPDBSMP0000911
PathWhizPW000892
No description available
Vitamin B6  Metabolism thumbnail
Vitamin B6 Metabolism
SMPDBSMP0000910
PathWhizPW000891
No description available
Xylose Degradation I thumbnail
Xylose Degradation I
SMPDBSMP0002117
PathWhizPW002105
No description available

Displaying pathways 1426–1443 of 1443