BacMap pathways

Pathways for Stigmatella aurantiaca DW4/3-1 gsam_325

Search and browse metabolic pathways associated with this bacterium.

626 pathways

Displaying pathways 1–25 of 626

ThumbnailPathwayIdentifiersDescription
2,3-Dihydroxybenzoate Biosynthesis thumbnail
2,3-Dihydroxybenzoate Biosynthesis
SMPDBSMP0000774
PathWhizPW000751
No description available
2-Heptyl-3-hydroxy-quinolone (PQS) biosynthesis thumbnail
2-Heptyl-3-hydroxy-quinolone (PQS) biosynthesis
SMPDBSMP0246552
PathWhizPW248313
No description available
5-phosphoribosyl 1-pyrophosphate thumbnail
5-phosphoribosyl 1-pyrophosphate
SMPDBSMP0576655
PathWhizPW611361
No description available
Adenine and Adenosine Salvage III thumbnail
Adenine and Adenosine Salvage III
SMPDBSMP0002084
PathWhizPW002072
No description available
Adenine ribonucleotide biosynthesis thumbnail
Adenine ribonucleotide biosynthesis
SMPDBSMP0389439
PathWhizPW398412
No description available
Adenosylcobalamin Salvage from Cobinamide thumbnail
Adenosylcobalamin Salvage from Cobinamide
SMPDBSMP0001898
PathWhizPW001884
No description available
ADP-L-glycero-beta-D-manno-heptose Biosynthesis thumbnail
ADP-L-glycero-beta-D-manno-heptose Biosynthesis
SMPDBSMP0002107
PathWhizPW002095
No description available
Amino Sugar and Nucleotide Sugar Metabolism II thumbnail
Amino Sugar and Nucleotide Sugar Metabolism II
SMPDBSMP0000906
PathWhizPW000887
No description available
Amino Sugar and Nucleotide Sugar Metabolism III thumbnail
Amino Sugar and Nucleotide Sugar Metabolism III
SMPDBSMP0000914
PathWhizPW000895
No description available
Aminoacyl-tRNA biosynthesis thumbnail
Aminoacyl-tRNA biosynthesis
SMPDBSMP0398229
PathWhizPW409026
No description available
Asparagine degradation: ansA, ansB thumbnail
Asparagine degradation: ansA, ansB
SMPDBSMP0526066
PathWhizPW554287
No description available
Benzoate Catabolism Pathway (benABCD  Operon Activation) thumbnail
Benzoate Catabolism Pathway (benABCD Operon Activation)
SMPDBSMP0290488
PathWhizPW292512
No description available
Benzoate degradation II thumbnail
Benzoate degradation II
SMPDBSMP0513950
PathWhizPW540681
No description available
Biofilm formation: epsA, epsB, epsC, epsD, epsE, epsF, epsG, epsH, epsI, epsJ, epsK, epsL, epsM, epsN, epsO thumbnail
Biofilm formation: epsA, epsB, epsC, epsD, epsE, epsF, epsG, epsH, epsI, epsJ, epsK, epsL, epsM, epsN, epsO
SMPDBSMP0515990
PathWhizPW543433
No description available
Biosynthesis of Siderophore Group Nonribosomal Peptides thumbnail
Biosynthesis of Siderophore Group Nonribosomal Peptides
SMPDBSMP0000783
PathWhizPW000760
No description available
Biosynthesis of Ursodeoxycholic Acid (UDCA) and Lithocholic Acid (LCA) (bai operon) thumbnail
Biosynthesis of Ursodeoxycholic Acid (UDCA) and Lithocholic Acid (LCA) (bai operon)
SMPDBPBK0587793
PathWhizPW624428
The bai operon, responsible for bile acid metabolism, particularly the 7-?-dehydroxylation process, encodes a series of key enzymes involved in the transformation of primary bile acids like chenodeoxycholic acid (CDCA) into secondary bile acids such as lithocholic acid (LCA) and ultimately ursodeoxycholic acid (UDCA). This operon is activated by the presence of bile acids, which induce its expression, thereby facilitating the efficient utilization of these compounds by gut bacteria.The baiB gene encodes a bile acid-CoA ligase that activates bile acids by converting them into their CoA derivatives, a crucial step for subsequent enzymatic processing. Following this, baiF is responsible for encoding a bile acid-CoA hydrolase that removes the CoA group, yielding free bile acids necessary for further modifications. The gene baiC then encodes a 7-?-hydroxysteroid dehydratase, which catalyzes the conversion of bile acids at the C7 position, a key step in the 7-?-dehydroxylation pathway. Furthermore, baiE encodes a 7-?-dehydratase that facilitates the rate-limiting step of dehydroxylation, transforming intermediates into 3-oxo derivatives that will be later converted into LCA or UDCA.baiA additionally plays a role in converting 3-oxo bile acids back to their 7-dehydroxylated forms, aiding in the production of LCA. The subsequent enzymes, baiH and baiG, involve the complex series of transformations of the 3-oxo derivatives, ultimately leading to the biosynthesis of UDCA through a series of reductive steps facilitated by bai genes like baiN. In summary, the bai operon orchestrates a finely tuned series of enzymatic reactions that enable gut bacteria to efficiently metabolize endogenous bile acids, yielding bioactive secondary metabolites such as LCA and UDCA, which play significant roles in the modulation of lipid and glucose metabolism in the host
Biotin-Carboxyl Carrier Protein Assembly thumbnail
Biotin-Carboxyl Carrier Protein Assembly
SMPDBSMP0002079
PathWhizPW002067
No description available
CAM (Crassulacean acid metabolism), dark thumbnail
CAM (Crassulacean acid metabolism), dark
SMPDBSMP0402427
PathWhizPW413681
No description available
Cardiolipin Biosynthesis CL(10:0(3-OH)/17:0cycw7/14:0/14:0) thumbnail
Cardiolipin Biosynthesis CL(10:0(3-OH)/17:0cycw7/14:0/14:0)
SMPDBSMP0622584
PathWhizPW661732
No description available
Cardiolipin Biosynthesis CL(10:0(3-OH)/19:0cycw7/10:0(3-OH)/19:0cycw7) thumbnail
Cardiolipin Biosynthesis CL(10:0(3-OH)/19:0cycw7/10:0(3-OH)/19:0cycw7)
SMPDBSMP0622405
PathWhizPW661553
No description available
Cardiolipin Biosynthesis CL(10:0/17:0cycw7/14:0/14:0) thumbnail
Cardiolipin Biosynthesis CL(10:0/17:0cycw7/14:0/14:0)
SMPDBSMP0622587
PathWhizPW661735
No description available
Cardiolipin Biosynthesis CL(12:0(3-OH)/12:0(3-OH)/12:0/12:0) thumbnail
Cardiolipin Biosynthesis CL(12:0(3-OH)/12:0(3-OH)/12:0/12:0)
SMPDBSMP0622448
PathWhizPW661596
No description available
Cardiolipin Biosynthesis CL(12:0(3-OH)/12:0/12:0/12:0) thumbnail
Cardiolipin Biosynthesis CL(12:0(3-OH)/12:0/12:0/12:0)
SMPDBSMP0622761
PathWhizPW661909
No description available
Cardiolipin Biosynthesis CL(12:0(3-OH)/17:0cycw7/12:0/12:0) thumbnail
Cardiolipin Biosynthesis CL(12:0(3-OH)/17:0cycw7/12:0/12:0)
SMPDBSMP0622592
PathWhizPW661740
No description available
Cardiolipin Biosynthesis CL(12:0(3-OH)/19:0cycw7/12:0(3-OH)/19:0cycw7) thumbnail
Cardiolipin Biosynthesis CL(12:0(3-OH)/19:0cycw7/12:0(3-OH)/19:0cycw7)
SMPDBSMP0622408
PathWhizPW661556
No description available

Displaying pathways 1–25 of 626