BacMap pathways

Pathways for Stigmatella aurantiaca DW4/3-1 gsam_325

Search and browse metabolic pathways associated with this bacterium.

1330 pathways

Displaying pathways 1126–1150 of 1330

ThumbnailPathwayIdentifiersDescription
Pyruvate to Cytochrome bd Terminal Oxidase Electron Transfer thumbnail
Pyruvate to Cytochrome bd Terminal Oxidase Electron Transfer
SMPDBSMP0002099
PathWhizPW002087
No description available
Quorum sensing - Autoinducer-2 Biofilm Regulation thumbnail
Quorum sensing - Autoinducer-2 Biofilm Regulation
SMPDBSMP0557344
PathWhizPW588975
No description available
Quorum Sensing: Agr peptide (AIP-1) Biosynthesis (Agr Operon activation) thumbnail
Quorum Sensing: Agr peptide (AIP-1) Biosynthesis (Agr Operon activation)
SMPDBSMP0461350
PathWhizPW480038
No description available
Quorum sensing: Alkylquinolones Biosynthesis (pqsABCDE Operon Activation) thumbnail
Quorum sensing: Alkylquinolones Biosynthesis (pqsABCDE Operon Activation)
SMPDBSMP0495078
PathWhizPW519797
No description available
Quorum Sensing: Biosynthesis of Autoinducer-3 (AI-3) thumbnail
Quorum Sensing: Biosynthesis of Autoinducer-3 (AI-3)
SMPDBSMP0513987
PathWhizPW540736
No description available
Quorum Sensing: Biosynthesis of Diffusible Signal Factors (DSFs) (RpfF/R operon Activation) thumbnail
Quorum Sensing: Biosynthesis of Diffusible Signal Factors (DSFs) (RpfF/R operon Activation)
SMPDBPBK0502384
PathWhizPW528286
The RpfF/R quorum sensing system is a sophisticated communication mechanism utilized by bacteria, such as Xanthomonas campestris and Lysobacter enzymogenes, to coordinate collective behaviors in response to changes in population density. At its core, the gene rpfF encodes an enzyme that synthesizes diffusible signal factors (DSFs) and their variants, such as BDSF, which are critical signaling molecules capable of diffusing through bacterial cell membranes.DSFs are fatty acid-based signaling molecules and include compounds like DSF (cis-11-methyl-2-dodecenoic acid) and BDSF (Burkholderia DSF, cis-2-dodecenoic acid). At low cell density, the extracellular concentration of DSF is below a certain threshold. In this state, the unphosphorylated histidine kinase, RpfC, actively participates in the negative regulation of DSF synthesis. This is achieved through a direct interaction with the DSF synthase RpfF, inhibiting the synthesis of DSF, which remains at a basal level. This regulatory mechanism does not involve the phosphorelay system and is independent of RpfG, allowing the bacteria to maintain a low signaling state. As the bacterial population grows, the concentration of DSFs increases, leading to their eventual accumulation in the extracellular environment. Upon reaching a critical concentration threshold, DSFs bind to the sensor domain of RpfC, triggering a crucial transition in the signaling pathway. At high cell density, the binding of DSF to RpfC activates autophosphorylation of the kinase, subsequently facilitating the transfer of the phosphate group to the response regulator RpfR. This transfer results in the phosphorylation of RpfR, which functions as a transcriptional regulator that orchestrates the expression of various downstream genes involved in multiple processes, such as virulence factor production, biofilm formation, and the biosynthesis of antimicrobial compounds, exemplified by the heat-stable antifungal factor (HSAF).Moreover, RpfC acts as a hybrid sensor kinase that integrates diverse biological functions through distinct molecular mechanisms. Its involvement in both the negative regulation of DSF production at low cell densities and the positive signaling pathway at high cell densities illustrates its versatility. In the positive feedback loop initiated by DSF binding, RpfC releases RpfF and activates RpfG through a four-step phosphorelay. The activation of RpfG subsequently leads to positive regulation of biofilm dispersal and enhances the production of virulence factors.Crucially, as the RpfR response regulator influences the transcription of genes related to virulence and biofilm characteristics, it can also feedback to modulate the biosynthesis of DSF itself. This feedback mechanism allows the bacterial community to finely tune its response to environmental conditions, ensuring optimal survival and competitiveness in fluctuating environments. Overall, the RpfF/R system exemplifies a complex and dynamic regulatory network whereby bacterial cells exploit quorum sensing to adaptively regulate gene expression and synchronize population-wide behaviors, such as enhanced virulence during host infection, modification of biofilm characteristics, and secretion of exopolysaccharides. The integration of these multifaceted regulatory pathways underscores the importance of the RpfF/R system in bacterial adaptability and ecological success
Quorum Sensing: ComX Pheromone Biosynthesis (com Operon and srfA Operon Activation) thumbnail
Quorum Sensing: ComX Pheromone Biosynthesis (com Operon and srfA Operon Activation)
SMPDBSMP0489909
PathWhizPW513827
No description available
Quorum Sensing: Indole Biosynthesis and Biofilm Formation thumbnail
Quorum Sensing: Indole Biosynthesis and Biofilm Formation
SMPDBSMP0507017
PathWhizPW533169
No description available
Quorum sensing: lsrR lsrK thumbnail
Quorum sensing: lsrR lsrK
SMPDBSMP0453902
PathWhizPW471553
No description available
Quorum sensing: N-(3-Oxodecanoyl)-L-homoserine lactone Biofilm Regulation thumbnail
Quorum sensing: N-(3-Oxodecanoyl)-L-homoserine lactone Biofilm Regulation
SMPDBSMP0649914
PathWhizPW687815
No description available
Quorum sensing: N-(3-Oxooctanoyl)-L-homoserine lactone Biofilm Regulation thumbnail
Quorum sensing: N-(3-Oxooctanoyl)-L-homoserine lactone Biofilm Regulation
SMPDBSMP0649899
PathWhizPW687800
No description available
Quorum sensing: N-butanoyl-L-homoserine lactone (C4-HSL) Biosynthesis thumbnail
Quorum sensing: N-butanoyl-L-homoserine lactone (C4-HSL) Biosynthesis
SMPDBSMP0434438
PathWhizPW449426
No description available
Quorum sensing: N-decanoyl-L-homoserine lactone (C10-HSL) and N-(3-Oxodecanoyl)-L-homoserine lactone Biosynthesis thumbnail
Quorum sensing: N-decanoyl-L-homoserine lactone (C10-HSL) and N-(3-Oxodecanoyl)-L-homoserine lactone Biosynthesis
SMPDBSMP0446640
PathWhizPW463314
No description available
Quorum sensing: N-dodecanoyl-L-homoserine lactone (C12-HSL)  Biofilm Regulation thumbnail
Quorum sensing: N-dodecanoyl-L-homoserine lactone (C12-HSL) Biofilm Regulation
SMPDBSMP0649927
PathWhizPW687828
No description available
Quorum sensing: N-dodecanoyl-L-homoserine lactone (C12-HSL) and  N-3-Oxo-Dodecanoyl-L-Homoserine Lactone Biosynthesis thumbnail
Quorum sensing: N-dodecanoyl-L-homoserine lactone (C12-HSL) and N-3-Oxo-Dodecanoyl-L-Homoserine Lactone Biosynthesis
SMPDBSMP0446740
PathWhizPW463425
No description available
Quorum sensing: N-hexanoyl-L-homoserine lactone (C6-HSL) and N-(3-oxohexanoyl)-L-homoserine lactone Biosynthesis thumbnail
Quorum sensing: N-hexanoyl-L-homoserine lactone (C6-HSL) and N-(3-oxohexanoyl)-L-homoserine lactone Biosynthesis
SMPDBSMP0434740
PathWhizPW449815
No description available
Quorum sensing: N-Octanoyl-L-homoserine lactone (C8-HSL) and N-(3-Oxooctanoyl)-L-homoserine lactone Biosynthesis thumbnail
Quorum sensing: N-Octanoyl-L-homoserine lactone (C8-HSL) and N-(3-Oxooctanoyl)-L-homoserine lactone Biosynthesis
SMPDBSMP0435845
PathWhizPW451072
No description available
Quorum sensing: N-tetradecanoyl-L-homoserine lactone (C14-HSL) Biofilm regulation thumbnail
Quorum sensing: N-tetradecanoyl-L-homoserine lactone (C14-HSL) Biofilm regulation
SMPDBSMP0649930
PathWhizPW687831
No description available
Quorum sensing: N-tetradecanoyl-L-homoserine lactone (C14-HSL) Biosynthesis thumbnail
Quorum sensing: N-tetradecanoyl-L-homoserine lactone (C14-HSL) Biosynthesis
SMPDBSMP0447059
PathWhizPW463796
No description available
Quorum Sensing: Nisin Biosynthesis (nis Operon Activation) thumbnail
Quorum Sensing: Nisin Biosynthesis (nis Operon Activation)
SMPDBSMP0477637
PathWhizPW499224
No description available
Quorum Sensing: Phr Peptides Biosynthesis (Rap-Phr Operon and spo0 Operon activation) thumbnail
Quorum Sensing: Phr Peptides Biosynthesis (Rap-Phr Operon and spo0 Operon activation)
SMPDBSMP0475374
PathWhizPW496437
No description available
Quorum Sensing: PlcR Biosynthesis thumbnail
Quorum Sensing: PlcR Biosynthesis
SMPDBSMP0521793
PathWhizPW549736
No description available
Quorum Sensing: Vibrio cholerae Autoinducer-1 Biosynthesis thumbnail
Quorum Sensing: Vibrio cholerae Autoinducer-1 Biosynthesis
SMPDBSMP0521139
PathWhizPW549002
No description available
Rhamnolipid Biosynthesis thumbnail
Rhamnolipid Biosynthesis
SMPDBSMP0122304
PathWhizPW123614
No description available
Rhamnolipid Biosynthesis (diRL(10:0(3-OH)/10:0(3-OH))) thumbnail
Rhamnolipid Biosynthesis (diRL(10:0(3-OH)/10:0(3-OH)))
SMPDBSMP0669657
PathWhizPW707436
No description available

Displaying pathways 1126–1150 of 1330