Xanthomonas cassavae VdM 147, ZD1

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

Xanthomonas cassavae VdM 147, ZD1 is a rod-shaped bacterium that possesses flagella, indicating its motility. This species is known to infect the host plant Manihot esculenta, commonly referred to as cassava. The bacterium is associated with the development of leaf spots, which can impact the health and yield of the cassava crops. The genomic structure of Xanthomonas cassavae VdM 147, ZD1 is characterized by the presence of seven replicons, suggesting a complex genetic architecture that may contribute to its adaptability and virulence. This complexity might allow the bacterium to thrive in various environments and potentially develop resistance to control measures. The accessions associated with this strain include CM002139.1, ATMC01000079.1, ATMC01000080.1, ATMC01000081.1, ATMC01000082.1, ATMC01000083.1, and CM002140.1, which likely provide a wealth of genetic information useful for further research and understanding the mechanisms underlying its pathogenicity. In conclusion, Xanthomonas cassavae VdM 147, ZD1 exemplifies the significance of bacterial pathogens in agriculture, particularly regarding their effects on economically important crops like cassava. The leaf spot disease it causes can lead to reduced crop quality and yield, highlighting the importance of monitoring and managing this bacterium to ensure sustainable agricultural practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas cassavae
StrainVdM 147, ZD1

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Xanthomonas cassavae VdM 147, ZD1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Manihot esculenta
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Gene Summary

Adenine Count

129 bp

Thymine Count

197 bp

Guanine Count

226 bp

Cytosine Count

285 bp

Genome Length

837 bp

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

7

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Helix-turn-helix xre-family dna binding protein-Not AvailableNegative2602628 - 260301713617.6
Hypothetical protein-Not AvailablePositive2603248 - 26035209656.53
hypothetical protein-Not AvailablePositive2603517 - 26036906365.86
hypothetical protein-Not AvailablePositive2603683 - 26038596317.41
AttlNot AvailableNot AvailablePositive2603798 - 2603812Not Available
Probable site-specific integrase-Q38617Positive2603951 - 260489235675.6
Ssdna-binding protein-P68676Positive2604889 - 260518510873.0
Hypothetical protein-P68671Positive2605189 - 26054408630.42
hypothetical protein-Not AvailablePositive2605469 - 26055974085.07
hypothetical protein-Not AvailablePositive2606195 - 26064919949.91

Displaying genes 1 – 10 of 4636 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Leaf spotsCausesPMC8578842

Displaying health effects 1 – 1 of 1 in total