Kingdom
Bacillati
Phylum
Actinomycetota
Class
Rubrobacteria
Order
Rubrobacterales
Family
Rubrobacteraceae
Genus
Rubrobacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Rubrobacteria |
| Order | Rubrobacterales |
| Family | Rubrobacteraceae |
| Genus | Rubrobacter |
| Species | Rubrobacter xylanophilus |
| Strain | PRD-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 60 |
| Temperature range | thermophilic |
| Habitat | Arima Onsen; hot spring; nonvolcanic Arima Onsen (hot spring) |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles - Pairs |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
488973 bp
Thymine Count
493569 bp
Guanine Count
1071447 bp
Cytosine Count
1071596 bp
Genome Length
3127021 bp
Protein-coding Genes
3145 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| inosose isomerase | Rxycam_00801 | Q9KAH2 | Negative | 771156 - 771998 | 30986.4 |
| malonate-semialdehyde dehydrogenase | Rxycam_00802 | A4IPB2 | Negative | 772072 - 773589 | 54830.2 |
| 5-deoxy-glucuronate isomerase | Rxycam_00803 | A4IPB4 | Negative | 773617 - 774414 | 29402.7 |
| 3d-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase | Rxycam_00804 | Q5KYR0 | Negative | 774434 - 776314 | 68297.0 |
| fructose import atp-binding protein frca | Rxycam_00805 | P0DTT6 | Negative | 776367 - 777158 | 28578.5 |
| ribose import permease protein rbsc | Rxycam_00806 | P0AGI6 | Negative | 777163 - 778185 | 35474.3 |
| hypothetical protein | Rxycam_00807 | Q4J710 | Negative | 778242 - 779231 | 34925.1 |
| 2-oxo-tetronate isomerase | Rxycam_00808 | Q5T013 | Negative | 779458 - 780276 | 29521.4 |
| putative zinc-type alcohol dehydrogenase-like protein yjmd | Rxycam_00809 | Q9UYX0 | Negative | 780320 - 781345 | 36206.8 |
| inosose dehydratase | Rxycam_00810 | Q5KYR1 | Negative | 781429 - 782346 | 33382.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
